Rhodococcus erythropolis PR4: RER_42310
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Entry
RER_42310 CDS
T00881
Symbol
sbcC
Name
(GenBank) probable nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
rer
Rhodococcus erythropolis PR4
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_42310 (sbcC)
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RER_42310 (sbcC)
Archaeal homologous recombinant proteins
RER_42310 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_27
AAA_29
SMC_N
CEP63
AAA_15
ZapB
AAA_21
CCDC144C
DUF5631
Motif
Other DBs
NCBI-ProteinID:
BAH34939
NITE:
RER_42310
UniProt:
C1A2V4
LinkDB
All DBs
Position
complement(4645655..4648633)
Genome browser
AA seq
992 aa
AA seq
DB search
MRLHKLEVSSFGPFADTVEVDFDRLGADGLFLLHGDTGAGKTTILDAVSFALYGRVPGAR
NEGKRLLSDHAPAGSVPRVELEATISGRRIKLVRSPEYSRPKKRGTGSITENAKATLTWL
DGRGENLSRIPDIGDEINRLMGMSADQFFQVVLLPQGEFAKFLRAESDERGKLLERLFDT
KRFVSVEAWFDAKRKASATALAAREQSVRLLLAKVETAAGLEVGAEAHPLEWSRKLLAEA
QDTRDASLAELVTAKDAAAEANRVLSAAQRTADLVARRNRATAELAAFNTGASQRAVIGA
ELETAKRALPVAAVAGDVDAAGLHLAAALESMTTAMSTYSALDGPEIFVPEVWPPTDDER
QRVVARIRTWRDEIVRLDAMAEDARRADAAEAEIEKLGVRRDTLSERIDAIAVERTQLPE
LVRSAGQRLEDAQRAHAALPGLEAALVKASDAATAAHEIVSLRAQAEKIRVQVLDARDAH
QSARGRWLDLVQKRIEGMAAELASSLAPGDPCQVCGSREHPALAQSDVVTVTEPDLEAAS
AAERAAEKALSKVADRQVTVERDIDRVIARGGDGDSEELDRLRAEARNAVDEATHSAGQV
GVLAQKLAQLNGRDTELQQESASLTAELAALAERRTTLSATVEQIRAAIVAAVGEDSTIA
ARRSRFEGLASAATAASEMRDDAVRAQARSAELSAKLSAAAAAAGFDSVEAAIGGVRSPA
RIAAIETELAKARDLEVAARTVLDDPEVVAVGEVETVDVDGPRGLALQCAEVVNATVAAA
SLAENRVSDLERFSGQLEKAYEAVAPERELHDELAALADVIAGKGQNSRKMSLRAYVLAS
RLEEIAVSASVRLQRMSGGRYEFVHSDEAGSRGRRGGLGLDIRDDFTGVVRSAKTLSGGE
SFLASLSLALGLADVVAAESGGIVLDTMFIDEGFGTLDADTLDSVMAVLDELRDGGRVVG
IVSHVDEMRQRIPSRLHVIRGRAGSSVKVIAG
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
gtgaggcttcacaaactcgaagtcagctctttcgggccctttgccgacaccgtcgaggtc
gacttcgaccgattgggtgctgacgggctgttccttctgcacggcgacaccggtgcaggc
aagaccacgatcctcgacgcggtttcctttgccctgtacgggcgggttccgggtgcacgc
aacgagggcaagcgattgctgtccgatcatgcgcctgccggttcggtgccacgcgtggaa
ctcgaagcgaccatcagtggtcgcagaatcaaacttgttcgtagtccagagtattcgcgc
ccgaagaagcgtggcaccggttcgatcacggagaacgcaaaggccacactgacgtggttg
gacggccgcggcgaaaacctttcgcgcatccctgacatcggtgacgagatcaaccgcctc
atgggcatgagcgctgatcagttcttccaggtggtgctcttgccgcagggtgagttcgcc
aaattcctgcgtgccgagagcgacgagcgaggcaaactgctcgagcgtctgttcgacacc
aagcggtttgtctccgtcgaggcatggttcgacgccaagcgaaaggcaagtgcgaccgcg
ctcgcggccagggagcaatccgtgcggctgctgctcgcgaaggtcgagacagctgcggga
ctcgaggtaggcgccgaggcacacccactggaatggtcgcgcaaactcctcgccgaggct
caggacacccgcgatgcaagtctcgcggagctggtgaccgcgaaagatgcagcagccgag
gctaatcgggttctgtcggcggcgcagcgaaccgcagatctggtagctcgccgtaatcgt
gcgaccgctgagctcgcagcattcaatacgggcgcctcccaaagagctgtgatcggcgcc
gaactcgagaccgccaagcgtgcactaccggtggccgctgtcgccggcgatgtggacgct
gccggcttgcatctcgctgccgcactcgaatcgatgaccacagcgatgtcgacctactcc
gcactcgacggtccggagattttcgtgccggaggtgtggccacccaccgacgatgagcgt
caacgcgtcgtagctcggatccggacctggcgtgacgagatcgttcgcctggacgcaatg
gcggaggacgctcgacgagccgatgcggcagaagccgagatcgagaaactcggagttcgg
cgagacactctgtccgagcgcatcgatgccatcgcggttgaacgcacacaactgccagaa
ctggtgcgctcggccggccaacgactggaggatgcgcaacgcgctcacgcggctctgcct
ggcctcgaggctgcactcgtaaaagcgtcggatgccgcgacagcggcccatgaaatcgtt
tctctgcgtgcacaagccgagaagattcgtgtgcaggtgttggatgcgcgcgacgcccat
cagagtgctcgcgggcgctggctcgacctcgtgcaaaagcgtatcgagggcatggcggcg
gagttggcgagttcactcgcgcctggtgacccatgccaggtgtgtggttcgcgtgaacac
cctgcgctggctcagtcggatgtcgtcacggtcaccgagcccgatctggaagccgcgtca
gcggccgagcgtgcggccgagaaagccctcagcaaggtggccgatcgccaggtaaccgtc
gaacgtgacatcgaccgggtgatcgcgcgcggcggagacggcgattccgaagaactcgac
aggctccgcgccgaggcacggaacgccgtcgacgaggcgacacactctgccggtcaggtt
ggagtgctggcacaaaaacttgcgcaactcaatgggcgtgacaccgaactacaacaggaa
tccgcttctctgacagccgaattggcggcacttgccgagcgtaggacgactctgtcagcg
acggtcgagcagattcgagcggcgatcgttgctgcggtgggagaagattcgaccatcgct
gctcggcgctcgcggttcgaaggccttgcatccgctgccacggcggcgtccgaaatgcgc
gacgacgccgttcgtgcgcaggcccgatcggcggaactgtcggccaaactgtccgctgct
gcggccgctgccggattcgattcggtcgaggctgcgatcggaggggtgagatcgcctgcc
cgaatcgcggcgatcgaaacggaactcgccaaggcgcgtgacctcgaggttgccgcccgg
actgtcctcgacgaccccgaagttgttgcggtgggtgaagtcgagaccgtcgacgtggac
ggccctcgcggcctcgcgcttcagtgcgccgaggtagtgaacgcgactgttgcggccgct
tccctggccgagaaccgtgtgtcggatctcgaacggttcagcggacaactcgagaaggcc
tacgaggcggttgcacctgagcgtgaactgcacgacgaactcgctgccctcgcagacgtg
atcgccggcaaaggtcagaacagtcgcaagatgtcgctgagagcgtatgtgctcgcttcg
cggttggaagagatcgccgtgtcggcatcggttcgtctgcagcggatgtccgggggacgg
tacgagttcgtgcacagtgacgaggcaggatctcggggtcgccgcggcggtctgggactc
gacatccgggacgacttcacgggcgtcgttcgctcggcgaagacgctctcgggcggtgaa
tcgttcttggcgtcattgtctttggcgctcggactcgccgatgtggttgcggcggagtcc
ggcggaatcgttctcgacacgatgttcatcgacgaaggattcggcaccctcgacgccgac
accctcgactcggtgatggctgtgttggacgagcttcgcgacggaggacgagtggtgggc
atcgtcagtcacgtggacgagatgaggcagcgaatcccgagtcgcctgcacgtcattcgc
ggacgtgcaggctcctcggtgaaggtgatcgcgggctga
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