Rhodococcus erythropolis PR4: RER_44340
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Entry
RER_44340 CDS
T00881
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer00250
Alanine, aspartate and glutamate metabolism
rer00310
Lysine degradation
rer00350
Tyrosine metabolism
rer00650
Butanoate metabolism
rer00760
Nicotinate and nicotinamide metabolism
rer01100
Metabolic pathways
rer01120
Microbial metabolism in diverse environments
Module
rer_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
RER_44340 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
RER_44340 (gabD)
00310 Lysine degradation
RER_44340 (gabD)
00350 Tyrosine metabolism
RER_44340 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
RER_44340 (gabD)
Enzymes [BR:
rer01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
RER_44340 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
RER_44340 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
RER_44340 (gabD)
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Motif
Pfam:
Aldedh
DUF3102
Motif
Other DBs
NCBI-ProteinID:
BAH35142
UniProt:
C1A3F7
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All DBs
Position
complement(4866209..4867672)
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AA seq
487 aa
AA seq
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MEPMDTFEFIRSVPTQLFVGGRFEPAENNATFPVADPATGKSLTDVADASPADALRALDE
AVAVSSKWASTPARERGEILRAVFEKITERAEDVALLMTLEMGKALAESRAEVKYGAEFF
RWFSEEAVRIGGRYTPAPAGNGRILVTKAPVGPCLAITPWNFPLAMGTRKIGPALAAGCT
IIVKPASETPLTMLLLAQLMAEAGLPDGVLSVLPTSKSGEVTGPLIDDPRLRKLTFTGST
GVGKMLVEKSAKRLLRTSMELGGNAPFVVFDDADVDKAVEGAVLAKLRNGGEACTAANRF
HVANAVREEFTTKLTEKMAAFTMGPGTDPETKLGPLINQNQLDTVAELVADAVDAGAKVR
LGGKAPGGEGYFYPATVLADVPASARILKEEVFGPVAAITGFDTEAEGIAAANDTEFGLA
AYIFTRDLDRALRVSDALESGMIGVNRGVISDAAAPFGGVKESGFGREGGTEGIEEYLNT
KYIALEN
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggaacccatggacacattcgaattcattcgatcagttcccacccagttgttcgtcggc
ggccggttcgagcccgcggagaacaacgcgaccttcccggtggcggatccggcgaccgga
aaatcgttgaccgacgtcgccgatgcgagccccgcggacgcgctgcgcgctctcgacgaa
gccgtggccgtctcgtcgaagtgggcgagcacacctgcgcgcgagcgtggtgaaattctg
cgagccgtcttcgagaagatcaccgagcgcgccgaggacgtggcgctgctgatgaccctc
gaaatgggcaaggcactcgccgagagccgtgccgaggtcaaatacggcgccgagttcttc
cggtggttcagcgaggaggccgttcgcatcggcgggcgctacacgccggcgccggcgggc
aacggccggatccttgtcaccaaggcgccggtcggaccgtgtctggccatcactccctgg
aattttccgttggcgatgggcacccgcaagatcggaccggcgttggccgccggctgcacg
atcatcgtcaagcccgcctcggagaccccgttgacgatgctgctgctcgctcagctcatg
gccgaagcagggctgcccgacggagtcctctcggtgttgccgacatcgaaatccggtgaa
gtgaccggccctctcatcgacgaccctcgactgcgcaagctcaccttcaccgggtccacc
ggcgtcggcaagatgctggtggagaagtccgcgaagcgattgctccgcacgtcgatggaa
ttgggtggcaatgcgcccttcgtcgtgttcgacgacgcggacgtcgacaaggcagtcgag
ggtgcggtactggccaagcttcgcaacggaggcgaagcctgcaccgccgccaaccggttc
catgtcgccaacgccgtgcgtgaggagttcacgaccaagctgaccgagaagatggcggcg
ttcacgatgggaccgggtaccgacccggagacgaagctcggcccgctgatcaaccagaac
cagctcgacacggtcgcagagttggttgcagatgcggtggatgccggggcgaaggttcga
ctgggcggtaaagcgccaggtggtgagggttacttctatccggccacggtgttggccgac
gttccggcgagcgcgcggatactgaaggaagaggtgttcggacccgttgccgcgatcacc
ggcttcgacaccgaagccgaaggcatcgcggccgccaacgacaccgagttcggattggct
gcgtacatcttcacgagggatctcgaccgtgcgcttcgggtctccgacgcactggaatca
ggaatgatcggcgtcaaccgaggagtgatctcggacgcggcagcgccgttcggcggtgtg
aaggaatccggattcggccgcgagggcgggaccgaggggatcgaggaatacctgaacacg
aagtacatcgcgctcgagaactga
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