Rhodococcus erythropolis PR4: RER_44570
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Entry
RER_44570 CDS
T00881
Name
(GenBank) putative DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RER_44570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_44570
Enzymes [BR:
rer01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RER_44570
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RER_44570
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RER_44570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
BAH35165
UniProt:
C0ZMA7
LinkDB
All DBs
Position
complement(4890304..4891170)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAGFLRQHAVGAVVGRVDIAALSVLKTFDPPITALQGRDVTGAARFGKHLA
LDCDGLWLVTHLSRAGWMRWLDNPSPTPPKPGKGPLALRVHFFTPEGLTPAFDLTEAGTK
KRLAVWVVNDPQEVPGIARLGPDAMAVTEAEFAEILGGTSARIKNSIVDQSLIAGIGNAY
SDEILHTARLSPFATSSRLTPEQISTLYAVMRSTLADAIERSEGQDAARLKGEKRSGMRV
HARTGLPCPVCGDVVREVSFAERSFQYCATCQTGGKPLADRRMSKLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacccgaggtggaagcgctggcagggttccttcgtcagcacgcggtcggc
gcagtagtgggacgcgtcgatatcgctgcattgagtgtgctcaagaccttcgatccgccg
atcacggctttgcaagggcgtgacgtcacgggcgccgcccgcttcgggaaacatctggct
ctggattgcgacgggttgtggttggtcacgcatctctcccgcgccggttggatgcggtgg
ctcgataatccgtcgccaacgccgccgaagccggggaaggggccgttggcgctgcgcgtt
catttcttcacacctgaagggttgacgccggcattcgatctcaccgaagccggcaccaag
aaacgtctcgccgtgtgggtggtgaacgatccgcaggaggttccgggcatcgcccggttg
gggccggacgcgatggctgtgacagaagctgagttcgcagagattctgggcgggacgtcg
gcgcggatcaagaactcgatagtcgatcagtcgctgatcgccggcatcgggaacgcctac
tcggacgagatcctccataccgcgagactatcgcccttcgcgacgtcgtcgaggctgacg
ccggagcagatttcgacgctgtatgccgtgatgcggtccacgctggccgacgcgatcgag
cgttcggaaggtcaagacgcggcgcggctcaaaggtgagaaacgctcggggatgcgagta
catgctcgcaccggacttccctgtccggtgtgcggtgacgtcgtacgcgaggtgtcgttc
gcggagcgttcttttcaatactgtgcgacgtgccagacaggcggtaagccgttggcggac
aggcgaatgtcgaaactgctcaagtag
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