Rhodococcus erythropolis PR4: RER_pREL1-01040
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Entry
RER_pREL1-01040 CDS
T00881
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RER_pREL1-01040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_pREL1-01040
Enzymes [BR:
rer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RER_pREL1-01040
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RER_pREL1-01040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_ligase_OB_2
DNA_ligase_C
AurF_N
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BAE46047
UniProt:
Q3L9R6
LinkDB
All DBs
Position
pREL1:101678..102517
Genome browser
AA seq
279 aa
AA seq
DB search
MLWSRNGNNISASFPEIVDALRSVLEHRETVLDGEIVALGPDGVPSFSLLQRRMHVLRPT
AQLRNEAVTSYYVFDVLDIDGTSTSDLPYLERREALANLSLEHPRIKVPPHWLNVDGPTM
LEVARKHHLEGIVAKNISSIYQSGKRSRDWIKTPLRANCEAVVCGFLPGSGGAAGGVGSL
ILGAHDDSRVLRYIGNVGTGLTDRQRRELRDKLVELHQPISPFTIEPPRAVTRNASWSRP
ILVCDVEYREYTGGSLRHPSFRGLRNDKTADEVNVPGRH
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgctctggtcgcgcaacggtaacaacatcagcgcatcattccccgagatcgtcgatgca
ctccgctcggtgctcgaacaccgagaaaccgtcctcgacggggaaatcgtcgccctcgga
ccggacggtgtgccgtccttctccctgttgcaacgccggatgcacgtgctcagacccacc
gcacagctccgcaacgaggccgtgacctcgtattacgtgttcgacgtcctcgacatcgac
ggcacatcaaccagcgatctgccctatctcgagcgccgcgaggcgctcgccaatctcagt
ctcgaacacccgcgcatcaaagtcccaccgcactggctcaacgtcgacggaccgaccatg
ctcgaggtggcgcgcaaacaccatctggaaggtatcgtggccaagaacatctcctcgatc
tatcagtccggcaagcgatctcgcgactggatcaaaacgcctctgagagctaattgtgag
gccgtagtgtgcggcttcctccccggctcgggaggtgcggcaggaggagtcggatcgttg
atcctcggcgctcacgacgattcaagggtcctcagatatatcggaaacgttggtacgggt
ctgaccgatcgacagcggcgcgaactacgagacaagctcgtcgaactccatcagccgatc
agcccgttcactatcgagccgccgcgagcggtcacccgcaatgcatcctggtcgaggccg
atccttgtctgcgacgtggaataccgcgagtacaccggtggcagccttcggcacccatcc
tttcgagggctgcgcaacgacaagaccgccgatgaggtcaacgtaccgggtcgtcactga
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