Rhopilema esculentum: 135684638
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Entry
135684638 CDS
T09994
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06237
collagen type IV alpha
Organism
res
Rhopilema esculentum
Pathway
res04382
Cornified envelope formation
res04512
ECM-receptor interaction
res04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
res00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135684638
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135684638
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135684638
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
res04147
]
135684638
00536 Glycosaminoglycan binding proteins [BR:
res00536
]
135684638
Exosome [BR:
res04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135684638
Glycosaminoglycan binding proteins [BR:
res00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135684638
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135684638
NCBI-ProteinID:
XP_065056342
LinkDB
All DBs
Position
Unknown
AA seq
1846 aa
AA seq
DB search
MREGTMKVFLALLFSLLKISNVLSQCSSSCSTCNTVCLGKKGDKGASGFQGLRGPAGLPG
YPGPEGPVGPGGEKGDRGYRGQNGAKGIRGPIGSPGLPGTSGIPGLPGREGRIGEPGIPG
CNGTKGDLGLRGKDGRPGSAGPRGLQGPGGLKGEPGESGATQEGAKGDKGERGPQGSKGL
SGHPGFYGAKGTKGVKGDKGNQGRTGPKGEKGLDKIKLTGPPGDRGVKGEQGPPGRDCDF
VTRPSTSNGTTVNVLQGPKGKTGPQGDQGEPGPKGEPGTGGRTGPPGDRGLKGDRGIKGD
EGPEGPIGEPGDRGLKGNKGDRGSQGAIGQQGRPGSDGQDGDTGLRGPAGAKGDRGLSIK
GDQGPAGDRGEKGDKGDLGLKGETGPRGDTGSAGRDGAAGPKGEKGEVGPLGPQGLRGMN
GEPGMEGSKGLLGRDGRQGPKGSKGRTGLSIFGKDGMDGEPGPPGPSGDKGVRGYPGLQG
PPGVVVSENGETGPQGDSGPPGPKGIKGIQGPSGLRGPRGLKGDKCTACPPAPKGEKGTT
GFRGLDGGAGEPGLSGAKGDKESREMTVLKVLQVCVVSRLGESGPRGPSGVKGSKGEKGE
SLSIKGDRGQKGLPGPNGSPGALGFQGPAGPRGQPGARGDPGANGLPGGRGPKGDQGPSG
EDGLTGDKGEKGSPGRGIDGRKGDKGTKGEVGAAGQTGPEGPTGPKGFSFFSQGESGPRG
PSGVKGSKGEKGESLSIKGDRGQKGLPGPNGSPGALGFQGPAGPRGQPGARGDPGANGLP
GGRGPKGDQGPSGEDGLTGDKGEKGSPGRGIDGRKGDKGTKGEVGAAGQTGPEGPTGPKG
ESWAARLSDIGYLEEGLRGDKGDRGAAGQRGEPGSEGPKGERGFKGDKGGKGAPGTTMKD
FVSRGDPGATGEKGDAGKSGQKGDLGPAGIIGAVGPKGDQGPSGESAGKGDKGEKGALGQ
LGPIGANGPLGQKGDRAEKGEPGPPGAIGQKGDRGEPGVGLPGKLGQTGLKGKDGPKGEK
GEAGPAGLIGSKGSKGAEGQALRGERGPEGPPGPAGPAGLAGFKGSKGVPGAVGLQGPSG
DDGDQGPLGPRGDKGDRGALGLKGEQGPAGIGGKGDKGQKGDPGIRGQQGATSDVVGPKG
TRGLPGADGPQGVRGVKGERGPTCEKGESGKDGQKGETGLTGPVGRPGPSGIKGDKGFIG
PRGVQGLQGDNGPKGEKGAEGTKGDIGPAGLPGIRGLPGSEGQKGDPGFAGAPGEKGDKG
DQGNPGPNGAKGNQGKEQKGERGEKGEKGIPGLKGTPGKDYALTEAELIKLGLLEMKGEK
GRIGPMGAKGDRGDTGEKGSKGDVGIQGPVGPAGDAGRVGVRGEKGDIGPEGGEGPVGSP
GLPGPPGKDGEPGPNGRAGVAGNKGEVGPPGKDGSKGTKGETGPRGEVGPPCTGTSGSRG
LRGEKGNSGPSGLQGLQGKKGEPAAGLRGDPGPQGPKGERGDSGPRGPAGISGDMGLVGP
AGDKGNQGQRGEPGREGQKGQKGAPASITGPTGPKGEKGLPGLRGFEGNIGPAGERGFQG
PPGPQGPKGERGNVGINGIKGVTGPKGNLGPRGDAGPSGLPGPKGQLGRPGPSGSAAFGF
YLTRHSQTTEVPSCPFGMEKIWDGYSLLYVQGNGRAEGQDLGKPGSCLRKFNTMPFLYCN
IKNQCKVASRNDYSFWLSTNEPVPMMTASGPAVEKYISRCAVCEAPAHVIAVHSQSLQPP
ACPRGWVSLWYGYSFLMYNSAGAEGDGQHLGSAGSCLEDFRAHPYVECHGDGKCYFYGST
YSFWLATIEDQNQFRRPQEDTIKADNLRRRVSRCQVCMKQPSNGGP
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgagggaaggcacgatgaaagtgtttttggcgctattattctcacttcttaaaatttcg
aacgtgctgtctcagtgctcgtcatcctgtagcacgtgtaacacagtttgtctaggaaag
aagggagacaagggtgcttctggattccaaggtcttcgtggtcctgcaggtctccccggc
taccctggtccagaaggcccagttggacctggtggagagaagggtgacagaggatatcgt
ggacaaaatggcgctaaaggaataaggggaccaattggatctcctggacttccaggtaca
tcaggaattccgggtttacctggccgagaaggtcgcattggagagcctggtatcccagga
tgcaacggaacgaagggtgacctcggtctcagaggaaaagacggacgtccaggcagcgca
gggccaaggggtcttcaagggccaggtggtctcaagggagaacctggagaaagtggggca
acacaagaaggagcaaagggagacaaaggagaaagggggcctcaaggatcaaagggttta
tctggtcatcctggattctacggagccaaaggaacaaaaggcgtcaaaggtgacaagggt
aatcaaggaagaactggtccaaaaggagaaaagggtcttgacaaaataaagcttacggga
cccccaggagacaggggagttaaaggagagcaaggtcccccaggacgtgattgcgacttt
gtaacaagaccaagcacaagtaatggcacaactgtcaatgttttgcagggccctaaagga
aaaacaggaccacaaggtgatcaaggcgaacctggaccaaaaggagaacctggaactgga
ggaaggactggacccccaggtgatcgtggtctaaaaggtgatcgtggaattaaaggcgat
gaaggtcccgagggtccaattggcgaaccaggcgacagaggtttgaaaggaaacaagggt
gatcgaggatcccaaggtgcaattggtcaacaaggaagacccggaagtgacggacaagac
ggtgatacgggcctaagaggtcccgcaggagcgaagggagatcgaggactatcaataaag
ggagaccaaggacctgccggtgatcgtggtgagaaaggcgacaaaggtgatcttggtctc
aaaggagagactggtccaagaggcgatactggatctgcgggacgtgacggagctgctgga
cctaaaggtgaaaaaggtgaagtaggcccactgggaccacaaggactgcggggaatgaat
ggtgaacctggaatggagggaagcaaaggactccttggaagagatggaagacagggccca
aaaggatccaaaggaaggactggtctttcaatttttggaaaagatggaatggatggagag
ccgggtcctccaggtccttcaggagataagggtgtccgtggataccccgggctgcaagga
ccccctggagttgttgtctcagaaaacggtgagaccggtcctcaaggtgactcaggaccg
ccggggccaaaaggaatcaaaggtatccaagggccatcaggattgagaggaccgagagga
ctcaagggtgacaagtgtaccgcctgcccacctgcgccaaagggagagaaagggactaca
ggtttccgtggattggatggaggggcaggtgagccaggtctgtcaggagcaaagggggat
aaggagagcagggaaatgacggtgctaaaggtgctacaggtctgcgtggtatcaaggtta
ggagaaagcggaccccgtggaccctcgggagtgaaaggtagcaaaggtgaaaagggagaa
agcctaagcattaaaggtgataggggtcagaaaggtttacccggacctaatggatcacca
ggtgcgcttggatttcaaggaccagcaggacctcgtggacaaccaggtgctcgaggtgac
cctggtgccaacggactaccaggtggacgcggacctaaaggagaccagggaccctcaggt
gaagatggtttgactggagacaagggggagaaaggaagtcccgggaggggaattgatgga
agaaagggtgataaaggaactaagggtgaagttggggcagctggacaaacgggcccagag
ggaccaaccggaccgaaaggtttttcttttttttcacagggagaaagcggaccccgtgga
ccctcgggagtgaaaggtagcaaaggtgaaaagggagaaagcctaagcattaaaggtgat
aggggtcagaaaggtttacccggacctaatggatcaccaggtgcgcttggatttcaagga
ccagcaggacctcgtggacaaccaggtgctcgaggtgaccctggtgccaacggactacca
ggtggacgcggacctaaaggagaccagggaccctcaggtgaagatggtttgactggagac
aagggggagaaaggaagtcccgggaggggaattgatggaagaaagggtgataaaggaact
aagggtgaagttggggcagctggacaaacgggcccagagggaccaacaggaccaaaaggt
gaatcttgggcggcacggctaagtgatatcggttatctggaggaaggtttacgtggagac
aaaggagacagaggagcagctgggcaaaggggagagcctggctctgaaggcccaaaggga
gaacggggcttcaagggagacaaaggaggaaagggtgctcctggaaccacaatgaaagac
ttcgtttctagaggggacccaggtgcgacaggagagaagggtgatgctggaaaatctggt
cagaaaggagacctgggacctgctggtataataggagctgtcggaccaaagggtgaccaa
ggtccatctggtgaaagtgctggaaaaggtgacaagggtgagaaaggagccctcggtcaa
cttggccctataggtgctaatggaccccttggacaaaaaggagacagagccgagaaagga
gaaccaggacctcccggtgctattggacaaaaaggtgaccgtggtgagccaggggttgga
ttacctggaaaactgggacaaaccggactgaaaggtaaggacggaccaaaaggagaaaaa
ggtgaagccggacctgctggcttaattggctccaagggtagcaaaggtgctgaaggacag
gctcttcgaggagaaagagggccagaaggaccccctggtcctgcaggtcctgcagggtta
gccggattcaaaggcagcaagggagtgcctggcgcagttggtcttcagggaccttctggt
gatgatggagatcaaggtcctcttggaccaaggggtgacaaaggagaccgaggtgcactt
ggtctgaagggagaacagggtccagctggcattggaggcaaaggtgacaaaggacagaag
ggagacccgggaatccgtggacagcagggagcaacaagtgacgttgtaggtccaaaggga
actcgtggtttgcctggtgcagatggtccgcagggagtcagaggtgtaaaaggtgaacgt
ggaccaacatgtgagaaaggtgaatctggcaaagatggacaaaagggagaaactggattg
acagggccagtgggtagacctggtccaagcggtataaagggtgacaagggattcattggt
ccacgtggtgtacaaggtcttcagggagataacggtcctaaaggagagaaaggtgcggaa
ggaacaaaaggtgatattggaccagcgggacttccaggcatcagaggtttaccaggaagc
gaaggacaaaaaggtgacccaggatttgctggagcacccggagagaaaggagacaaggga
gaccaaggtaatcctggtccgaacggagctaaagggaaccaagggaaggagcaaaaggga
gaaagaggggagaaaggtgaaaaaggtattccaggattgaaaggaaccccaggaaaggac
tatgcgctgacagaagcagagttgataaaacttggtttattggaaatgaaaggagagaaa
ggaagaataggccccatgggtgctaagggtgacagaggagacacaggcgagaagggcagc
aagggtgatgttggtatccaaggtcccgttggtcctgcgggtgacgcagggcgcgtaggt
gtacgaggagaaaaaggtgacattggtcctgaaggaggcgagggtccagttggctcaccg
ggactgccagggcctcctggaaaggatggtgaaccgggtccaaatggaagagcaggtgtt
gcaggaaacaaaggagaagttgggccacctggtaaagatggctcaaagggtaccaaagga
gaaactggaccaagaggtgaagttggacctccatgcactggcactagcggatctcgtggg
cttagaggcgaaaagggtaattcagggccatcaggactccaaggtttacaaggaaagaaa
ggagaaccggctgcaggtcttagaggtgatccaggtccacaaggacctaaaggtgaacgg
ggagatagtggacccagagggccggctggtatctctggtgacatgggattggtaggacca
gctggagataaaggaaaccagggacagagaggagagcctggacgtgaaggtcaaaaaggg
cagaaaggagcaccagcttcaattacaggacctacaggacctaagggagagaagggtctg
cctggtctaagaggatttgaagggaacataggaccagctggagaaagaggattccaagga
ccacccggaccacaagggcctaaaggtgaacgtggcaatgtaggcatcaatggaattaaa
ggtgttactggtccaaaaggaaacttaggcccacgtggtgatgcaggcccaagtggattg
ccaggtccgaaaggacaactcggaagaccgggcccaagtggatccgcagctttcggattt
tacctcacaagacacagtcagactacagaggttccatcctgtccatttggaatggaaaaa
atttgggacggatacagtttactttatgtccaaggaaacggacgtgcagagggacaagat
ttgggaaaaccaggctcttgcctaaggaagttcaacacgatgcctttcttgtactgcaac
atcaagaaccaatgcaaagtagcttcaagaaatgactatagtttctggcttagtaccaat
gaaccagtgccaatgatgacagcatccggaccagccgtcgagaagtacatcagccgctgt
gcagtttgtgaggccccagcccatgtcatcgcagttcacagtcaaagcctacagccccca
gcatgcccacgtggctgggtcagcctgtggtatggatacagtttcttaatgtacaacagc
gcaggagctgaaggtgacggccaacatctcggctccgcagggtcttgtcttgaagacttc
agggcccacccttacgtcgagtgtcatggtgatggtaaatgctatttttacggctcaact
tacagtttctggctcgctacaatcgaagatcaaaatcaattcagaagaccccaggaagac
acaataaaagcagacaatcttagacgcagagtgagccgctgtcaagtttgcatgaagcaa
ccatcaaacggtggaccataa
DBGET
integrated database retrieval system
