Rhopilema esculentum: 135686845
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Entry
135686845 CDS
T09994
Name
(RefSeq) exosome complex component RRP43-like
KO
K12586
exosome complex component RRP43
Organism
res
Rhopilema esculentum
Pathway
res03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
res00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135686845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
res03019
]
135686845
Messenger RNA biogenesis [BR:
res03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
135686845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
SGTA_dimer
Motif
Other DBs
NCBI-GeneID:
135686845
NCBI-ProteinID:
XP_065059277
LinkDB
All DBs
Position
Unknown
AA seq
296 aa
AA seq
DB search
MIQISFQLLVSFQISRGTAMVMAADFKIAKPVEFYQQFLGEYVRPDGRGLEEFKKTLLNI
DSISTAEGSALVKLGNTTVLCGIKAEIAQPSLDAPNGGFIVSSVELPPLCSAKFRPGPPS
EQAQVLTQFLIDTANSSSFLKPESLCIAQGKAVWCLYADVICLNYDGNIQDAALFALLAA
MHNCSLPSASYSEETGETVVSTDKKSSLDIASNPIASTFAVFQNSQVVADPTEEEEGIAD
TVITIVTLEDNSLCSVYKPGGLAIKDDIFRQCIDRALSRGQELRQTIEKLTANIDR
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaatctcgtttcaattattagtctcatttcagatttcacgtggaactgcaatg
gtgatggcggctgattttaagattgccaagccagttgagttttatcagcagtttctgggt
gaatatgtaaggccagatgggagaggattggaagaattcaagaagacacttcttaatatt
gattctatttcaactgcagaaggctctgctttggtcaaacttggaaacactacagttctt
tgtggaattaaagcagaaattgcacagccatctcttgatgcccctaatggtggtttcatt
gtgtccagtgtagaactccctccattgtgctcagcaaaatttcgaccaggtccacccagt
gaacaagcccaagttttgacccagttcctcattgataccgctaatagctcttctttttta
aaaccagaaagtctatgcattgctcaagggaaggctgtatggtgtttgtatgcagatgtc
atctgcttgaattatgatggtaatattcaagatgctgcactctttgctttgcttgctgca
atgcataattgcagtttaccttccgcttcatacagtgaagaaacaggggaaactgttgta
tcaactgataaaaaatcttccttagacattgccagtaatcccatcgctagtacatttgct
gtgtttcaaaattcacaggttgttgctgatccaactgaagaggaagaaggcatagctgat
actgttatcaccatagtaaccttagaagacaatagcttatgctcagtatacaaaccagga
ggattggcaatcaaagatgatatctttcgccagtgcattgacagagccttgtctcgtggc
caagaattaaggcagaccatagaaaaactgacagcgaacattgatcgctag
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