Rhopilema esculentum: 135690727
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Entry
135690727 CDS
T09994
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
res
Rhopilema esculentum
Pathway
res03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
res00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135690727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
res03041
]
135690727
Enzymes [BR:
res01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135690727
Spliceosome [BR:
res03041
]
Complex C
Other components
Step II factors
135690727
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
SRP54
AAA_14
AAA_30
AAA_16
T2SSE
ATPase_2
AAA_23
AAA_7
NB-ARC
TssR_VWA
Motif
Other DBs
NCBI-GeneID:
135690727
NCBI-ProteinID:
XP_065064439
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MSKFTSIDRLEGSSNEVGGLIIKKKKTGDQGENREFKRPSESRLGLKRLAEEKRKQKDEE
ARIKEAGEEYSRYKDEKEESDSYSEKRYKKDGRHYRAYKPETPSHPGGVNKEAQARIKER
YERSRDKGVYADSRDNKRKKGRTEARTDEDSAASRYYKKREKEMKRDSERRKGDKRSEKD
YGRHSSTRRGYEQWEDTPSRSRRSGSDGNESTPRISSREIKTPSRSTWDDETPGKSKWDI
ESPRYSSSSERKERRMPADGETPRFTPTHKYNAWADDKRKLGTTPGSIRRGRRRDSDEDD
DDGKLPNQDKQQWEEEQKKLDRAWYDMDAGYDENSNPFANVSEEYAKKREEALKKQRQKK
ISARARQVRKDNELWETNRLLTSGVVQRTEFDEDFDESDEAKVHLLVHNIVPPFLDGRFI
FTKQPEPVIPIKDPTSDMATVARKGCHVVRLHREQKERLKAQKKEWELAGTKLGNIMGIK
KKDEDDEDKNKNDVDYKSSQRYADVMNDQNEGVSDFARKKSLKEQREFLPIFAVRQELLR
IVRDNNIVVIVGETGSGKTTQLTQYMHEDGYTKYGMIGCTQPRRVAAMSVAKRVSEEMKV
HLGDEVGYAIRFEDVTNEKTMIKYMTDGILLRESLKEADLDHYSVIIMDEAHERSLNTDV
LFGLLREVVARRNDLKLIVTSATMDATKFSNFFGNVPVYTIPGRTFPVDVLYSKTTIDDY
VDGAVKQALQIHLTPTKGDILIFMPGQEDIEVTCDLISERLAEVDEAPPLAVLPIYSQLP
SDLQAKIFEKAPDGVRKCIVATNIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDSLQVF
PISQANSNQRSGRAGRTGPGQAFRLYTEHQYKEEMLRTTVPEIQRTNLANVVLLLKSLNV
ENLLEFHFMDPPPQDNILTSMYQLWVLGALDNTGTLTNLGRKMVEFPLDPALSKMLITSL
DMGCSDDVLIIVSMLSVPSIFYRPKGREEDSDNAREKFQVPESDHLTLLHVYQQWKANEY
SASWCNEHFIHVKAMRKVREVRSQLKDIMYQLKMDIKSCGFEWDLIRKCICSAYFHQAAR
LKGIGEYVNLRTGMPCHLHPTSALYGMGYSPDYVVYHELIMTAREYMQCVTAVDGTWLAE
LGPMFFSVKDSTAARQEKRVKTENNKEAMEEEMKEASKKLKDREIERLHVTPSPRSQIAT
PGRKTPSTPRRTPYKFGL
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagtttacatcgattgatcggctcgaagggtcgtcaaatgaggttggtggccta
attattaagaaaaagaaaacaggagatcaaggagaaaacagagagttcaagcgtccttcg
gaaagccgtcttggtttaaagagacttgcagaggaaaagaggaaacagaaagatgaagag
gcgaggataaaagaagcgggggaagagtattcgaggtataaagatgaaaaagaagagagt
gattcttacagcgaaaagaggtataaaaaagatggacgtcattacagggcatataaaccc
gagactccatcacatcctggtggggtaaataaagaggcacaagcaaggataaaagagagg
tatgaaagaagtagggataagggggtttatgcagacagtagagataataaaaggaaaaag
ggtagaacagaggcaagaactgatgaagactctgcagcatcaaggtactacaaaaagaga
gaaaaagaaatgaaacgtgattcagaaagacgcaaaggtgataaaagatctgaaaaagat
tatggaaggcattcaagtacaagaagaggatatgagcagtgggaggataccccaagtaga
agtaggcgatctggtagtgatggcaatgaaagtactccaagaataagttctagagagatc
aaaacaccatcacgtagcacctgggatgatgaaactcctggcaagtcaaagtgggacata
gagtcacctagatactccagctcttcagaaagaaaagagagaaggatgcctgcagatggg
gaaacaccaaggttcaccccaactcataagtataatgcttgggctgatgacaaaagaaaa
cttggtacaactccagggtctattagaagaggcagaagaagagattcagatgaggatgat
gatgatggaaaacttccaaatcaggataagcaacaatgggaagaagagcagaagaaactt
gaccgtgcttggtatgacatggatgctggctacgatgaaaactcaaatccttttgcaaat
gtatcagaagaatatgccaagaaaagagaggaagcccttaagaaacaaagacagaagaaa
atatctgccagggcgagacaagttagaaaggataacgagctttgggagacaaatcgttta
ctaacgagtggagtcgttcagcggacagagttcgatgaagactttgatgagtccgatgag
gccaaagtccatctccttgttcataatattgtccccccatttctagacggcaggttcatt
tttactaagcagcctgaacctgtaataccaataaaggaccctacctcagatatggcaact
gtcgcacgcaaaggatgccatgtcgtcaggttgcacagggaacaaaaagagcggctaaag
gcccaaaagaaggaatgggagcttgcgggaacaaagcttggcaatatcatggggatcaaa
aagaaggatgaagacgatgaggataagaacaagaacgatgttgattacaagtccagtcag
cgttatgctgacgtaatgaacgatcaaaatgagggtgtcagtgacttcgcaaggaagaaa
tcacttaaagagcagagggagtttcttcctatatttgcagtccgccaagagctattacgt
atcgtgagagacaataacattgtcgttattgttggagaaactggatcaggaaagacaacg
cagctcacccagtatatgcacgaggatggatatacaaaatatggtatgatagggtgcact
cagcctcgtagggttgctgcaatgtcagttgcgaagcgtgtcagcgaagaaatgaaagta
cacctaggcgatgaagttggatatgcaattagattcgaagatgtaacgaatgagaaaaca
atgataaaatacatgacggatgggattttgctgcgtgaatcattaaaagaggctgatttg
gaccattacagcgtgattattatggacgaagcacacgaaagatccctgaacacggacgtt
ctgtttggccttttacgagaggttgttgctcgtagaaatgaccttaagctcatagttact
tcggctactatggatgctactaagttttcgaatttctttggaaatgttcctgtttatacg
atccccggtcgtacatttcctgttgatgttttgtacagcaagactacgatcgatgactac
gtagatggagctgtcaaacaagcacttcagatccatttgacgccaacaaaaggcgatata
ctgatatttatgccaggacaagaagacattgaagttacgtgtgatttgatttcagagcga
ctggcagaagttgacgaagcacccccgttggctgtcttgcctatctactctcaacttcca
agtgatctgcaagcgaaaatcttcgaaaaagccccggatggcgtacgaaaatgcatcgta
gccacgaatattgcagaaacatctttgactgtcgatggtatcatgtttgttgttgacgct
ggttattgcaagttgaaggtgttcaatccgagaattggcatggactctttgcaagtattc
cccattagccaggcgaactctaatcaaaggtccggcagagctgggaggactggacccggg
caagcatttcgactatataccgagcaccaatacaaggaagaaatgttgcgaacgactgtc
cctgagattcagcgaacaaatttggcaaacgtggttctgcttctgaaatcgctcaatgtt
gagaatctactcgagtttcacttcatggatcctcctccgcaggacaatatcctaacatca
atgtaccagctctgggtgctcggagctttggacaatactggtaccctaacaaaccttgga
agaaagatggttgagtttccactagaccctgcgttatcgaaaatgttgataacatcgtta
gatatgggatgcagtgatgacgtactgattattgtttctatgctgtcggttccttcaata
ttttaccggcctaaaggacgcgaagaagacagcgataatgcacgagaaaagttccaggtt
cctgagagtgaccatttaacgctcctccatgtttaccaacaatggaaggctaacgaatat
tcagcatcatggtgcaacgaacacttcatacatgtgaaggccatgcgcaaggtaagagaa
gtccgttcgcagcttaaagacataatgtaccaactgaagatggacatcaaatcatgtggc
tttgaatgggatcttataaggaaatgtatttgttctgcttactttcatcaagctgccaga
ctaaagggcatcggtgaatatgtgaacttacgtacaggtatgccttgccaccttcaccct
acaagcgccttatatggaatggggtacagcccggactatgttgtttaccacgagctcatt
atgaccgccagggaatatatgcaatgtgttacagctgtggatggaacgtggctggccgag
cttggtcccatgtttttttcggtcaaagattctactgctgcccgacaggagaaacgagtg
aaaactgaaaataataaagaagcaatggaagaagaaatgaaagaagcaagtaaaaagctg
aaagacagggagatcgaaagactccacgtaacaccatcaccaaggagccaaatcgccacc
ccaggcaggaagacaccctctacaccaagacgcaccccatacaagtttgggctttaa
DBGET
integrated database retrieval system
