Rhopilema esculentum: 135693361
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Entry
135693361 CDS
T09994
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
res
Rhopilema esculentum
Pathway
res03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
res00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135693361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
res03019
]
135693361
03041 Spliceosome [BR:
res03041
]
135693361
Messenger RNA biogenesis [BR:
res03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135693361
Spliceosome [BR:
res03041
]
Complex B
Other components
Prp19-related factors
135693361
Complex C
135693361
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_15
TPR_2
TPR_12
TPR_7
ARM_TT21
ARM_TT21_C
TPR_IF140_C
TPR_1
PPR
RPN7
TPR_10
TPR_16
TPR_4
Motif
Other DBs
NCBI-GeneID:
135693361
NCBI-ProteinID:
XP_065067886
LinkDB
All DBs
Position
Unknown
AA seq
863 aa
AA seq
DB search
MLADKTGKITSKMTVKSDKKANLILEEADVPYEEEILRHPYSVKCWMRYVEHKTTTGGKN
QAVNLIYERALKELPGSYKLWYNYLKLRRRQVKGKCITDVAFEEVNNAYERSLVFMHKMP
RIWIEYCQFMSDQKKITRTRRLLDRALRALPITQHRRIWPIYLKFIKSYNMPETAVRIYR
RYLKLQPENAEEYVDYLIDIGWLDEAAVRLAAIVNDENFISKKGKSNHQLWHELCELMSK
NPSQVKSLKVGQIIHGGLRRFTDGLGQLWCSLADYYIRAGDFEKARDVYEEAIQTVMTVR
DFGQVFDAYAQFEEGIINSKMESSTEATMTEEDEIDLELRLARFEILMDRRPLLLNSVLL
RQNPHNVHEWHKRVALYEDKVNEIINTYTEAVKTVDPKQAIGKPHTLWVEFAKFYENHDQ
IDEARIIFEKAVKVEYRTVDDLASVWCEYAEMEIRKENYEKALRLMRRATAIPSKKAGVN
YHDEREKVQDRVHKSLKLWSMYADLEESLGTFQSTKAVYNRVIDLRIANPQIILNYASFL
EEHNYFEESFKAFERGIALFKWPHVNDIWNTYLTKFSKRYGGTKLERARDLFEQCLENCP
PKNAKPFFLMYAKLEEEHGLARHAMAVYDRASTSLPPNEQYEIFNIYIKRAAEIFGVTHT
RDIYEKAIEALPNEFAREICTRYADLEKKLGEIDRARAIYSYSSQMCDPRTSGNFWKTWH
DFEVRHGNEDTFREMLRIKRTVQAQYNTQVNFMSAQLLAAQAAAKDDESKNEMEKLEAAA
NVLAEEAKKDKPSAAANQKGVLFVRGETTQPAELSDVATTVNPEEISLEDEDDDSSDEED
QRDDIQLEQKQVPAEVYGGLKPQ
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgataaaacaggaaaaataacaagtaaaatgacagtaaaaagcgacaaaaag
gcaaacctcatattagaagaagcagacgttccttatgaagaggaaatactgcgacaccct
tattcagtgaaatgctggatgagatatgtggagcacaagacaactactggtggcaagaat
caagctgtaaaccttatttatgaaagagcgttgaaagagttgccaggaagttacaaactt
tggtacaactatttgaagctgagaagaagacaagttaagggcaaatgcataacagatgtt
gcctttgaagaagtcaataatgcgtatgaaaggtcccttgtattcatgcataagatgcca
agaatatggatagaatattgtcaatttatgtccgatcagaagaaaattacaagaacacgg
cggcttcttgacagagctctcagggctctcccaatcacgcagcatcgcagaatatggccc
atttacttgaagttcattaagagttacaacatgcctgaaactgctgttcgcatatatcga
agatacttgaaattgcagcctgaaaatgcggaggagtacgttgattatctgattgacatt
ggctggcttgatgaagcggctgttaggcttgcagctattgttaatgacgaaaatttcatc
tctaaaaagggcaagtctaatcatcagctttggcacgaactgtgtgaacttatgtcgaaa
aatccaagccaggtgaaaagcttaaaagtcgggcagatcattcacggaggactgcgtcga
ttcacggatggcctaggccaattatggtgttcgcttgcagattattatatacgggctggt
gattttgagaaggcgagggacgtttatgaagaagcaatccaaactgtaatgaccgttaga
gactttggacaggttttcgatgcttatgctcaattcgaagagggtattatcaactcaaag
atggagagttcaacggaagcaacgatgacagaggaagacgaaattgacctcgagcttcga
cttgcaagattcgaaatcttgatggacagaaggcctttattattgaatagtgtcttgttg
cgacagaatccgcacaacgttcacgagtggcacaagcgtgtagctctttatgaagataag
gttaacgaaatcatcaatacgtacactgaagctgtaaaaacagtcgaccctaaacaggcc
atcggaaagccacatactctttgggtagagtttgcaaagttctatgaaaaccatgaccag
attgatgaggcccgtatcatttttgagaaggctgtcaaagttgaataccggacagttgat
gatcttgcttcagtttggtgtgaatacgctgagatggagataaggaaagaaaactatgaa
aaagccttgaggttgatgagaagagccactgctattccatcaaagaaagctggcgtcaac
taccacgatgagagagaaaaagttcaagatcgtgttcacaagtcccttaaattgtggtcc
atgtatgcggatttagaggagagtcttggcactttccagtcaacaaaggctgtttacaat
cgagtcatcgatttgcggattgcaaacccacaaattattcttaactatgcttcattcctt
gaagagcacaattattttgaagagtctttcaaggcatttgagcgaggcatcgcattgttc
aaatggccccatgttaacgacatatggaacacttacctcacaaagttctccaagcgttac
ggtggaacaaaattagaacgagcgcgcgatctatttgaacagtgtttagaaaactgtcct
ccgaagaatgccaaaccgttttttctcatgtacgcgaagttggaggaggagcatggtctt
gcaagacatgcgatggcagtctacgatcgagcttcgacatcacttccacccaatgaacaa
tacgagatattcaacatctatattaaaagagctgcagagatatttggggtcacacatacg
agagatatctacgaaaaagcaattgaagctttaccaaatgaatttgctcgtgagatttgt
acaagatatgcagacttggagaaaaaacttggagaaattgacagagcccgcgcaatctac
agttactcatcacaaatgtgtgacccgaggacaagtgggaatttttggaaaacttggcac
gactttgaagttagacatggaaacgaagacacatttagggaaatgctgaggataaaaagg
acagtgcaggcacaatataatactcaggtcaatttcatgtcagctcaactgttggcagct
caagcagcagctaaagatgacgaatcaaagaatgaaatggagaaactggaagctgctgct
aatgtcttggccgaagaagcgaagaaagacaaaccatctgctgcagccaatcaaaaaggc
gttttgtttgtcaggggtgagacgacacagccggctgaattgagtgacgttgccacaacg
gtcaatccagaagaaataagtctagaagatgaagatgatgacagcagtgacgaagaggac
caaagagacgatatccagttagagcaaaagcaggttccggctgaggtttatggtggtctc
aagccgcagtga
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integrated database retrieval system
