Rhopilema esculentum: 135694471
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Entry
135694471 CDS
T09994
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
res
Rhopilema esculentum
Pathway
res03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
res00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135694471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
res03019
]
135694471
03041 Spliceosome [BR:
res03041
]
135694471
03009 Ribosome biogenesis [BR:
res03009
]
135694471
03016 Transfer RNA biogenesis [BR:
res03016
]
135694471
Enzymes [BR:
res01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135694471
Messenger RNA biogenesis [BR:
res03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135694471
Spliceosome [BR:
res03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135694471
Complex C
U4/U6.U5 tri-SnRNP related factors
135694471
Ribosome biogenesis [BR:
res03009
]
Eukaryotic type
Pre-60S particles
Helicases
135694471
Transfer RNA biogenesis [BR:
res03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135694471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DBC1
DUF4159
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
135694471
NCBI-ProteinID:
XP_065069304
LinkDB
All DBs
Position
Unknown
AA seq
1048 aa
AA seq
DB search
MITRMVPHLAARLDQEHAFKMANDLFGEDLFSVFDGQDSQETSAKDEVANIGLSTSTARK
RTLEDQKRDDDGEEVVAPSSSVQTKKQKSDDHDLALLDIPRVQVQNVETMEACTHEVVIP
EGCDYSPLQAINEKPAKEYPFILDPFQKEAVKCLANNQSVLVSAHTSAGKTVVAEYCIAM
SLQRKQRVIYTTPIKALSNQKYRELYDEFQDVGLMTGDVTINPSASALIMTTEILRSMLY
RGSELMREVAWVVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWVA
YLHKQTCHVVYTDFRPTPLQHYLYPSGGDGLYLVQDEKKQFREDNFGKAMRVLQDSSSSS
DNKWQKAGRRSFKGPTDVHKIVKLIMERNFAPVIVFGFSKKECEANALQMSKLDFNTDEE
KKLVQEVFANAIDCLSNEDKCLPQVENILPLLKRGIGIHHGGLLPILKEVIEILFSEGLI
KALFATETFALGLNMPARTVVFTNARKFDGIDFRWISSGEYIQMSGRAGRRGLDDRGIVI
LIVDEKMGPDVGKGLLKGAADPLNSAFRLTYNMVLNLLRLEEINPEYMLSKSFYQFQNYA
GIPKLLEELKEKDRKRDEIVIPKEDTAMSYYKIRQQLDKLSKELMKFIHQPKYCLPYLQP
GRLVQVSDRDQDFGWGCVVNFQKKNNQKGASASLASETIYIVEVLLNCSKTTKKMATGEV
PVPCQPGEKGEMVVVPVLIHLLQSISSIRLYLPKDLRPLDARETVKKSVQEVKKRFPDGL
PVLDPIEDMNIKDEQLKKIVNKIEVLEHRLYNHPLHKDPDLERLYNLCAKKANIDHEMKA
VKQNLKKAKTVIQLDELKCRKRVLRRLGYVNASDVIELKGRVACEISSADELLLTEMIFN
GVFNDLSSEQCVALLSCFVFQEKADDPTQVQEELAGPLRQMQESARRIAKVSEEAKMDID
ADRYVDKFKPSLMDVVYSWCKGASFGEICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAI
GNTELENKFATGITKLKRDIVFAASLYL
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgataacgaggatggtgcctcatttagcagcgaggctggatcaagaacatgctttcaag
atggcgaatgacttgtttggcgaagacctcttctctgtcttcgatggtcaagattctcaa
gagacgagcgctaaggatgaagtagcaaatataggcttatctaccagcactgctcgtaaa
agaactttggaagaccaaaaaagggatgatgacggcgaggaagtggttgcacccagtagt
agtgtccaaacgaaaaaacaaaaatccgatgaccacgatcttgcgttgttagatattcca
agggttcaggtgcaaaatgttgaaacaatggaagcctgtactcatgaggttgttatccca
gaaggatgtgattattcaccacttcaggctatcaatgaaaaaccagccaaggaataccct
tttattctggacccgtttcaaaaagaggctgtgaaatgcttagcaaataaccaatcggtc
ctcgtctctgcgcacacatcagctggcaaaactgtggttgctgagtattgtattgcaatg
tctcttcaacgaaaacagagagttatttacacaactccaatcaaagcactgagcaatcag
aaatacagagagctttatgatgaatttcaggatgttggtctcatgaccggggatgttaca
atcaatccaagtgcaagtgccttgatcatgaccactgagattttgagaagtatgttatac
agaggatcagagttgatgcgtgaagttgcttgggtggtttttgacgaaattcattacatg
agagataaagaaagaggagttgtttgggaagaaacaattatcttgctgccggacaatgtt
cactacgttttcctgtccgctacaattccaaatgcacggcagtttgcggaatgggttgcc
tatctccataaacagacttgtcatgttgtgtatacagacttcagaccaacccccctgcag
cactatctctacccttccggaggagatggattgtatttggttcaagacgagaagaaacaa
tttcgagaagacaattttggtaaggctatgagagtgttgcaagactcttcgtcgtcgagt
gataataagtggcaaaaggcaggaagaaggagttttaaaggtccgactgatgttcataag
attgttaaactgataatggaacggaatttcgcccccgtcattgtctttggattttcgaaa
aaagaatgcgaggccaatgcacttcagatgtcaaaactcgatttcaatacagatgaagag
aagaagctcgtccaggaagtttttgccaatgccattgattgcctttcaaatgaagacaaa
tgcttgcctcaggtggaaaatatccttccgctattgaagcggggaataggcatccatcat
ggcggactccttccaattctcaaagaagtgatagagatcttattctccgaaggcttaatc
aaggcgctctttgcaactgagacgtttgccctgggacttaacatgccagcaaggaccgtt
gtcttcacaaatgctcgaaaattcgatggcatcgactttagatggatctcaagtggcgaa
tatatccagatgagtggcagagctggaaggcgtgggcttgacgacagaggcattgtcatc
ttgattgttgatgagaagatggggccagatgtcggaaaggggcttctaaagggagccgca
gatcctctcaacagtgcctttcgtctaacctataacatggtgttgaaccttcttcgattg
gaagagattaatccagaatatatgctctcaaagtcgttttatcagtttcaaaattatgct
ggcatcccaaagcttttagaagagcttaaagaaaaagataggaagagagacgaaatcgtt
atacctaaggaagatacagccatgtcttactacaaaataagacagcagctagataagctt
tcaaaagaattaatgaagttcatccatcagccaaagtattgccttccctatttgcagcca
gggagacttgttcaggtgagcgaccgtgatcaggattttggctggggatgcgtggtaaat
tttcaaaaaaagaacaaccaaaagggagccagtgctagtctagcaagtgaaacaatatac
attgtcgaagttttgttgaactgctctaaaaccacaaagaaaatggcaactggcgaagtt
cctgtaccatgtcaaccaggcgaaaagggggaaatggtggtggttccagttcttatacac
ttattgcaatccataagcagtatacgtttataccttccaaaagacctgcgacccctggat
gcaagagagacagtgaagaagtcagttcaggaagttaaaaagcgattccctgatggcttg
cctgtactggatccaattgaagacatgaacataaaggacgaacaactgaaaaagattgtg
aacaaaatcgaagtattggagcaccgcttatacaatcatccattacacaaagatccagac
ttggagagactatacaacttatgtgcgaagaaagctaatattgatcacgaaatgaaagcc
gttaagcaaaatctgaagaaggcaaaaactgtcattcaactcgacgagcttaagtgccgc
aagagagtcctcagaaggcttggttacgtcaacgcttctgacgtcatcgagctgaagggt
cgtgtggcgtgtgaaataagcagcgcagacgaattgcttctgactgagatgattttcaac
ggtgtttttaacgatctgtcttcagagcagtgcgttgcactgttgagctgctttgtattt
caagaaaaggccgatgaccccacacaagtccaagaagagctggcagggccactgaggcaa
atgcaggaatctgctcgacggatcgcaaaagtttctgaagaggcgaaaatggacattgac
gctgaccgatatgtggacaaatttaagccaagtctgatggatgtcgtttattcttggtgc
aaaggtgcttcatttggggaaatatgcaaaatgacagatgtgttcgaaggcagcataatt
cgctgtatgaggcgtttggaggagctactacgtcagatgtgtcaagctgccaaagctatt
ggcaatactgaactggaaaacaagtttgccactggtattacaaaactcaagcgagatatt
gtgtttgcagccagtttgtatctttaa
DBGET
integrated database retrieval system
