Rhopilema esculentum: 135696307
Help
Entry
135696307 CDS
T09994
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
res
Rhopilema esculentum
Pathway
res03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
res00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135696307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
res03041
]
135696307
Enzymes [BR:
res01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135696307
Spliceosome [BR:
res03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135696307
Complex C
U5 SnRNP specific factors
135696307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
AAA_19
PhoH
Motif
Other DBs
NCBI-GeneID:
135696307
NCBI-ProteinID:
XP_065071734
LinkDB
All DBs
Position
Unknown
AA seq
2138 aa
AA seq
DB search
MADASARSRQYVYKENSNLVLQADLSLIERRGRNEATGEVLSLVGHLQGTKMGDRALRAQ
APELKEKKAKKQKKVDSDETLSKMRTSTLLSGDAEDISGIYYHPKTRETKHTYEVLLSFI
QAAIGDQPRDILCGAADEVLFALKDDKLRDKDKKKEITALLGDVPDERFALLVNLGKKIS
DYAVDRDAGGDDDMIDENYGVAVQFDEDEEEEQEVDEIKEESEEEDDGEIMEVDEGSSTL
RGNLDMDEKAARRAEEELNAHQIDAFWLQRELNKFYNDAEVSQEKSVEVLDALKNAADER
DLENKLVLLLGHDKFSIIRKLRENRMKVLFCTLLAAAQSDRERDEIENKMRSQPDLAEIL
HKLLEGESEDVAQEERARKMAVRKSKAGGDSGAGDQDEKAGRLNRKVIDLEDISFKEGSH
LMANKKCQLPDGSFRKQKKGYEEVHVPALKPKAFKDGESLVQITNIPKYAQAAFEGYSTL
NRIQSRLCDAALKTDDNLLLCAPTGAGKTNVALLTILREISKHINLDGTINVDEFKIIYI
APMRSLVQEMVMNFGKRLSSYGITVSELTGDHQLNKEQIDSTQIIVCTPEKWDIITRKAG
ERTYTQLVRLIIIDEIHLLHDDRGPVLETVVARTIRQIESTQEHIRLIGLSATLPNYEDV
ATFLRVDPAKGLFFFDNSFRPVPLEQQYVGVTEKKAIKRFQVMNDVVYDKVMDNAGKNQV
LVFVHSRKETGKTARALRDACLERDTLGQFLREDSASTEVLRTEAEQVKNLELKDLLPYG
FAIHNAGMSRVDRALVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
VELGALDILQMFGRAGRPQYDTKGQGVLITTHNELQYYLSLLNQQLPIESQFVSKLADNL
NAEIVLGTIQNVKDAATWLGYTYLYIRMLRNPTLYGISHDDMKTDPIIEQRRYDLIHSAA
SILDKNGMIKYDKKTGAFQSTELGRIASHYYCTQESMATYNKLLKPTLSEIELFRVFSLS
SEFKYINVREEEKLELQQLLERVPIPIKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYITQSAGRLLRAIFEIVLHRGWAQLTDRAINLCKMIDKRMWLSMTPLRQFKKIPMEVIK
KIEKKDFPWERFYDLGYNEIGELIHAPKMGRVVHKFVHQFPKVELSTHIQPITRSTLHVE
LTIMPDFQWDEKIHGNAEAFWIFVEDVDSESILHHEYFLLKSKYAQDEHVVKFFVPVFEP
LPPQYFIRVVSDRWLHSETQLPVSFRYLLLPEKNPPPTELLDLQPLPVSALRRPDFEALY
ADRFPYFNPIQTQVFNALYNSDDNVFIGAPTGSGKTICAEFAILRMLSQNPESKCVFVTP
LQSLAEQAYIDWRTKFGIQLGKNVVMLTGETSADLKLLAKGNIVISTPDKWDVLSRRWKQ
RKNVQNVSLFILDEAHLIEEENGPVMEVICSRMRYISSQIERNIRIVALSSSLANAKDIG
QWLGVAANNMFNFHPNVRPVPLELHIQGFNITHTGSRLTAMLKPTYQAIIKHAPKKPIMV
FVPSRKQSKLTALDLVAYSGAENQSQRFLHCTEEDLQPHLKRIQEKTLKETLTYGVGYLH
EGLSDTEVKVVEQLFTSGAVQLLVVSRNLCWAVTCYSYLVVIMDTLYYEGKIHTYMDYPV
TDVLQMVGRANRQLIDDAGKAVILCLSSKKEFYKKFLYEPLPVESHLDHCLHDHFNAEVV
TKTISNKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSEMVENTLSDLEQSKC
ISIEDEINVSPLNLGMIAAYYYINYTTIESFSASLTAKTKLKGLIEIIASAHEYENLPIR
QHEDSILKQLSNRVPYKVSSTKFTDPHVKTNLLIQAHLSRMQLSAELQSDTEFILSKAMR
LIQACVDVLSSNGWLSPAMTAMELAQMVTQAMWNKDSYLKQLPHFSADIVKRCQEKEIES
IFDIMNMEDDERSQLLRLADHQMDDVARFCNRYPNIDMSFELEDKDSIYSGKPVVVMVEL
EREDEQPGPVIAPFFPQKREEGWWLVIGEQKTNSLISIKRLTLQQKAKVRLDFIAPTVGA
HSYFLYFMSDCYMGCDQEYPFKISVAEGDDMSESEDSD
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcatcagcaagatcacgtcagtacgtatacaaagagaattccaatcttgtt
ttgcaagctgacttgtcccttattgaaagaagaggtagaaatgaggcaacaggggaagtt
ttgtcacttgttggccaccttcaaggaacaaagatgggtgacagagccctaagagctcaa
gcacctgagttgaaagaaaagaaggccaaaaagcagaaaaaggtagacagtgatgaaact
ctctcaaaaatgagaacatcaacattattatcaggagatgcagaggacatttctggtata
tactaccatcctaagacaagagaaaccaaacacacatatgaagttctgctcagcttcatt
caagctgctattggagatcagccacgggatattttgtgtggtgcagcagatgaagttctt
tttgccctaaaagatgacaaactcagagacaaagacaagaagaaggaaatcacagcactt
cttggagatgtgccagatgagagatttgcattgcttgtcaacttgggtaaaaaaatttct
gactatgctgtggacagggatgctggtggtgatgatgatatgatcgatgagaactacggt
gtcgcagtgcagtttgatgaagatgaagaagaggaacaagaagtggacgaaataaaagaa
gaatcagaggaagaggatgacggagaaataatggaggttgatgaaggctcgagcacattg
agaggaaatctcgatatggacgagaaagcggcgagaagggctgaagaagagttaaatgcc
catcaaatcgatgccttttggcttcagagagaattgaacaagttttacaatgatgcagaa
gtttctcaggaaaagtctgttgaggtgctggatgcgctcaagaatgctgcagatgaaagg
gacttggaaaacaagcttgtgcttctgttgggacatgacaagttctcaatcataagaaag
cttagagaaaatcgcatgaaagttttattctgcacactacttgcggctgcacagtccgac
cgggagagagatgagattgaaaacaagatgagaagtcaaccggatcttgcagagatactc
cacaagttgttagaaggagagtcagaagacgttgcccaggaagaaagagctagaaaaatg
gcagtgcgaaaatcaaaggcgggtggagactctggtgctggcgaccaagatgaaaaagct
ggccgcctgaaccgaaaagtcatcgacttggaggatatttcattcaaagaaggaagtcat
ttgatggcgaacaaaaagtgccagctgcctgatggctctttcaggaaacaaaaaaaaggg
tatgaagaagtccacgtacccgcattgaagccgaaggcctttaaagatggcgagagtctt
gttcagattacaaatattcccaagtatgcacaggctgcctttgagggctactcaactctg
aacaggatacagagtcgcctctgcgatgccgcgttgaaaacagatgacaatcttttgctc
tgtgctccaactggagcgggtaaaacgaacgttgcattgcttactattttgagagagatc
agcaaacacatcaacttggatggaaccattaatgtcgatgagtttaagataatctacatt
gcaccaatgcggtcgcttgtacaagaaatggtgatgaactttggaaaaaggctcagttct
tatggtataacggtctcggaactgactggggatcaccaactgaacaaggagcaaatagat
agcactcagattatcgtatgcacgccagagaagtgggacatcataacaaggaaagccggg
gagcgaacgtacacacagctggtacggctgatcatcatcgacgagattcatcttcttcat
gatgacagaggccctgttttagagacagtcgtggcaaggacgatacgacagatcgaaagc
acacaagaacacattcgacttataggccttagtgccacgctacccaactacgaagatgtc
gcaacgtttttgcgtgtagaccctgcgaaaggattgtttttctttgataacagcttcagg
ccggtgccattagagcagcagtatgttggtgtcacagagaaaaaggcaatcaagagattc
caggtgatgaatgatgttgtttatgacaaagtaatggacaacgccggtaaaaatcaagta
ctcgttttcgtgcattcgagaaaggaaactgggaagacagcaagggcactgagagatgcc
tgcttggaaagagatacgcttgggcagtttttacgtgaagattctgcaagtacagaggtt
ttgaggactgaagctgagcaggtgaagaacctggagctcaaggatcttctgccttacggt
ttcgccattcacaatgctggtatgtcgagagtagacagagcacttgtcgaagatctcttt
gccgacaaacacatccaagttctggtctctacagccacattggcatggggtgtcaatctt
cccgctcatactgtaattattaaaggaactcaggtgtatagtccggagaaaggccgatgg
gtggagcttggcgctcttgatattcttcaaatgtttggccgtgctggaaggccgcagtac
gacacgaaaggccaaggtgtactcataacaacccacaacgagttgcagtattacctttca
ttgctgaaccaacagctgcctatcgaaagccagttcgtttctaagcttgcggacaacctg
aatgctgagattgttttaggaacgattcagaatgttaaggatgccgctacttggctaggt
tacacatatttgtatattcgtatgctgcgaaaccctacactgtatggtatatcacatgat
gacatgaagacagatccaattatagaacagcgacgctatgatcttatacattctgctgcg
tcaattctcgacaaaaatggaatgattaagtatgataagaagactggagcttttcagtca
acagaactcggaagaattgccagccactactactgcacgcaggaatcaatggccacatac
aacaaacttctcaagccaactcttagtgagatcgaattgttccgagttttctctttgtcc
tctgagttcaagtatatcaatgtaagagaggaggaaaagctagagctgcagcaacttctt
gagcgtgttcctataccaatcaaagagagtattgaagagccttctgctaagattaatgtt
ctgctgcaagcttacatatcccagctaaagcttgaaggattcgccctaatggctgacatg
gtttacataactcagtcggcaggtcgtctgttacgtgcaatatttgaaattgtgttacat
cgtggttgggcgcagttgacagatcgagctatcaatctttgcaaaatgatcgacaaaaga
atgtggttatctatgactcctttgaggcaatttaaaaagatcccgatggaagtgataaag
aaaatagagaagaaagatttcccgtgggaacgcttttacgatcttggttacaacgagatc
ggggagctgattcatgcaccgaaaatgggaagggtcgtccacaagtttgtgcaccagttt
ccaaaggtcgaactgtctacccatatacagcctattacaagatcgacattacatgtcgaa
ttaacgattatgccagactttcaatgggacgagaaaattcacggaaacgctgaagcattc
tggatttttgtggaagatgtggatagcgagagcattctgcatcatgagtatttcctgctg
aaatctaagtacgcccaagacgagcacgtggtcaagttctttgtgcctgtcttcgaacca
ctgccgccccagtacttcatcagagttgtttcagatagatggctacattcagaaacacaa
ctaccggtttcatttcggtatttgctgctgccagaaaagaacccaccaccaacagagctt
ttagatttgcagccgctaccagtgtccgcacttcgacgtccggatttcgaagcactctat
gcggacaggttcccgtacttcaatccaatccaaactcaagttttcaatgcgctgtacaac
tcagatgacaatgtcttcatcggagcacccactggcagtgggaagactatttgtgccgag
ttcgcgattcttcgcatgctgtcgcagaacccagaaagcaaatgtgttttcgtcactccg
ttgcagtcgctcgctgaacaggcttatattgattggcgaacgaaattcggtatccagctc
ggaaagaacgtggtcatgttaactggtgaaacaagcgctgatttgaagttgctggcaaag
ggaaacatcgtgatcagcaccccagataagtgggatgtgctttctaggcgttggaaacag
cgtaagaatgtccagaacgtttccttgtttattcttgatgaagcccatctcatcgaagag
gaaaatgggcccgtgatggaagtaatctgctcaagaatgagatatatatcttctcagatt
gaaagaaatattcgcattgtagcgttgagctcttcgcttgcaaatgccaaggatattggc
caatggctcggtgtagcagctaataacatgttcaacttccacccgaacgtgcgtcctgtt
ccattggaattgcatattcagggtttcaacatcactcacactggctccagactcacggca
atgttgaagccaacatatcaggccataattaaacacgcacctaagaaaccaatcatggtt
tttgttccatcgcgtaaacaaagcaaactgactgcgcttgacttggttgcctatagtgga
gctgagaaccaatcacaaagatttcttcactgcacggaagaagatttgcagccacatcta
aaaaggattcaggaaaaaaccctcaaagaaaccttgacttatggtgttggatatttacac
gaaggactttcggatactgaagtgaaagtggtcgagcaactcttcacatctggagcagtt
cagctgctagttgtctcacgaaacctctgctgggcagtcacttgctactcatatttagtt
gttatcatggacaccttgtactacgaagggaaaatacacacgtatatggattatcccgtt
accgatgttcttcagatggtcggaagagcaaacaggcaactcattgatgatgcaggaaaa
gctgttatcctttgcctgtcatcaaaaaaggaattctacaaaaagttcctttatgagccg
ctgccagttgaatcacatctggatcactgcctacacgatcacttcaatgccgaagttgtt
accaagacgatcagcaataaacaggatgcagttgattatttaacatggacgtttctgtac
cgcagaatgacacagaacccgaattactacaatttgcaaggtgtatcgcatagacacttg
tctgatcatctttcggagatggtggagaacactctcagcgacctagaacaatctaagtgt
atctcgattgaagacgagatcaacgtgtctcccttgaaccttggcatgattgctgcttac
tactacatcaactacacgaccatcgaatcattcagtgcgtcactaacagccaagacaaaa
ctgaaagggctgattgagattatcgcatctgctcatgaatatgaaaatctgccaatcaga
cagcatgaagattccattttgaaacagctgtcaaacagagttccatacaaagtgagcagt
accaaatttaccgatcctcacgtgaaaacaaacttgctgatccaagcacatctgtcaaga
atgcaactttctgctgagctccaatctgatacagagtttatcctaagcaaggcaatgcgg
ctaatccaggcttgtgttgacgtgcttagtagtaatggatggctgtcacctgcaatgact
gcaatggaacttgcccaaatggtgactcaggcaatgtggaataaagattcttacttgaag
cagcttccacacttctccgcagatattgttaaaagatgccaagaaaaggaaatcgaatct
atctttgatatcatgaacatggaagatgatgaaagaagtcagttgttacgattagctgac
catcaaatggatgacgtcgcacgcttttgcaaccgttatccgaacatcgatatgtcgttc
gagttggaagataaagatagtatatattcgggcaaaccggttgttgtaatggtcgaattg
gaacgtgaagatgagcaacctgggccagtcatagcaccattcttcccgcagaaaagagaa
gaaggatggtggcttgttatcggtgaacaaaaaacgaacagcttgatctctattaagagg
ctgacattgcagcagaaagcgaaagtgaggctagattttatcgcgccaactgtcggcgct
cattcctacttcctctacttcatgagcgattgctacatgggttgtgatcaagagtatccg
ttcaagatctcagtggctgagggagacgacatgagcgagtcagaggatagtgattag
DBGET
integrated database retrieval system
