Rhizobium etli CFN 42: RHE_CH00114
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Entry
RHE_CH00114 CDS
T00317
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B protein
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ret
Rhizobium etli CFN 42
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ret03016
]
RHE_CH00114 (truB)
Enzymes [BR:
ret01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RHE_CH00114 (truB)
Transfer RNA biogenesis [BR:
ret03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RHE_CH00114 (truB)
Prokaryotic type
RHE_CH00114 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
Zf-C2H2_ZNF451_5th
Motif
Other DBs
NCBI-ProteinID:
ABC88939
UniProt:
Q2KDZ7
LinkDB
All DBs
Position
complement(123530..124462)
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AA seq
310 aa
AA seq
DB search
MSKPRKPKGRPISGWLILDKPMDFGSTEAVSKLKWLYKAQKAGHAGTLDPLASGMLPIAL
GDATKTVPYVMDGRKIYEFTVSWGEERATDDLEGDVTQSSERRPTEQQIRDILPRYIGTI
SQVPPQFSAIKIAGERAYDLARDGEAVEIPSREVEIFRLTLLGCRDANTAHFEVECGKGT
YVRALARDFGRELGCYGHISGLRRTFVAPFSEDAMVPLANLVALEAIEDMDERLAALDAL
LIDTCEALSALPHLVINDDQAHRLKMGNPILVRGRDAPIAESEAYATARGRLIAIGEIGQ
GEFRPKRVFA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaccacgcaaacccaagggccggccgatttccggctggctgatcctcgacaag
ccgatggatttcggctcgacggaagccgtttccaagctcaaatggctctacaaggcgcag
aaggccggccatgccgggacgcttgacccgctcgcctccggcatgctgccgatcgcgctc
ggcgatgctaccaagaccgttccctatgtgatggacggccggaaaatctatgagttcacc
gtcagctggggcgaggagcgcgccaccgacgatctcgaaggcgatgtgacgcagagctcg
gaaaggcgccccaccgagcagcagatccgcgatatcctgccccgctacatcggcacgatc
agccaggtgccgccgcaattttctgccatcaagatcgcgggtgaacgcgcctatgatctg
gcgcgcgacggggaagccgtcgagattccttcacgcgaagtcgagatattccgactgact
ctgcttggctgccgggatgccaataccgcgcatttcgaagtggaatgcggcaagggcact
tatgtccgggcgctcgcccgcgatttcggccgcgagctcggctgctacggccatatatca
ggcctgcggcgcaccttcgtcgcgcccttttcggaagacgccatggtgccgcttgcgaac
ctggtggcgctcgaagcgatcgaagacatggacgagcggctcgccgccctcgacgcattg
ctgatcgacacgtgcgaagcgctttcggcgctgcctcacctcgtcatcaacgacgaccag
gcgcaccggctgaagatgggcaatccgatcctggtgcgcggccgcgatgcgccgattgcc
gaaagcgaagcctatgcgacggcccgtggccggctgatcgcgatcggtgagatcggccag
ggcgaatttcgcccaaagcgggttttcgcctaa
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