Rhizobium etli CFN 42: RHE_CH00355
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Entry
RHE_CH00355 CDS
T00317
Symbol
fpg
Name
(GenBank) formamidopyrimidine-DNA glycosylase protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHE_CH00355 (fpg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH00355 (fpg)
Enzymes [BR:
ret01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RHE_CH00355 (fpg)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RHE_CH00355 (fpg)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RHE_CH00355 (fpg)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABC89177
UniProt:
Q2KDA9
LinkDB
All DBs
Position
367500..368390
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AA seq
296 aa
AA seq
DB search
MPELPEVETVKRGLAPAMEGARVTRLELRRRDLRFPFPDALAERVSGRTIVGLGRRAKYL
LVDLDDGNTLISHLGMSGSFRIEEGAASAMPGEFHHARSKDEKHDHVVFHLEGGGGPRRV
VYNDPRRFGFMDIVGRADLSAHPFFRDLGPEPTGNELGATYLAERFRDKAQPLKSALLDQ
KNIAGLGNIYVCEALWRSHLSPIRAAGTLVTSGGRPKQQLDLLVASIREVIADAIAAGGS
SLRDHIRADGSLGYFQHSFSVYDREGQACGTPGCGGTVARIVQAGRSTFYCAACQK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccagaagtcgaaacggtcaaacgcgggctggcgccggcgatggagggg
gctcgcgtcacgaggctggagctgcgccgcagggatctgcgcttcccctttcccgatgcc
ctggcggagagggtttccggccgcaccatcgtcgggcttggccgccgcgccaaatatctg
ctggtcgatctcgacgacggcaatacgctgatttcccatctcggcatgtccggttccttc
cgcatcgaggagggtgcggcctcggcgatgccgggcgaattccaccatgcccgcagcaag
gacgagaagcacgatcacgtcgtctttcacctcgaaggcggaggcgggccgcgccgcgtc
gtctataacgatccgcgccgtttcggcttcatggatatcgtggggcgtgccgatctttcc
gcgcatcccttcttccgagacctcggcccggagccgacgggcaacgagctcggcgccacc
tatctcgccgaacggttccgcgataaggcacagcccttgaagagcgcgctcctcgaccag
aagaacatcgccggtctcggcaatatatatgtctgcgaagcgctgtggcgctcgcacctt
tcgccgatccgcgccgccggcacgctggtgacatcaggcggccggccgaagcagcagctc
gacctgctggtcgcctcgatccgcgaggtcatcgccgacgcgatcgccgccggtggctcg
tcgctgcgcgaccatatccgggcggatggatcgctcggctatttccagcattccttctcc
gtctatgatcgcgaaggtcaggcttgcggcacgcccggctgcggcggtacggtcgcccgt
atcgtacaggcgggtcgctccaccttctattgcgccgcctgccagaaataa
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