Rhizobium etli CFN 42: RHE_CH00607
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Entry
RHE_CH00607 CDS
T00317
Symbol
appC
Name
(GenBank) oligopeptide ABC transporter, permease protein
KO
K02034
peptide/nickel transport system permease protein
Organism
ret
Rhizobium etli CFN 42
Pathway
ret02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RHE_CH00607 (appC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ret02000
]
RHE_CH00607 (appC)
Transporters [BR:
ret02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
RHE_CH00607 (appC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BPD_transp_1
OppC_N
DUF3624
Motif
Other DBs
NCBI-ProteinID:
ABC89423
RhizoBase:
RHE_CH00607
UniProt:
Q2KCL3
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All DBs
Position
complement(623856..624731)
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AA seq
291 aa
AA seq
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MLARSPARSPGPIVRSLHRFLLNRTALLGLCMIALMIVAILSYPLWWSFKPNDIDLLAMN
AQPGPTHWFGTDGVGRDILARVLDGGRISLLVALTSTVISAIIGFLIGAVSALAGRWADA
VTMRFVDLVMTLPPVIFLLVLASIAGTGIWPTVFVISLLSWPLLARMVRARLLELRERDF
VMAARGMGAGLPHLLLRHGLPNSIDILVVFATLQIANAILLEAGLSFLGLGIAPPAASWG
NMLNAARSTAVLEQYPWQWLFPGGFLVLAVLAINFIGDGLRDAFDPRAELN
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgctggcgcgaagccctgcccgcagcccgggcccgatcgtacgctctctgcatcgattc
ctgctcaaccggaccgccttgctcggcctctgcatgattgcgctgatgatcgtcgcgatc
ctttcctatccgttgtggtggagcttcaagcccaacgacatcgatctgctggcgatgaat
gcccagccggggccgacacactggttcggcaccgatggagtgggccgcgacatcctcgcc
cgcgtcctggacggtggccggatctcgctgctggtggccctcacctcgaccgtcatttcc
gccattatcggcttcctgatcggcgccgtctcggcgcttgccggccgctgggcggatgcg
gtcaccatgcgtttcgtcgatcttgtcatgacgctgccgccggtcatcttcctgctggtg
ctcgcctcgatcgccggcaccggcatctggccgacggtcttcgtgatctcgctgctctcc
tggcctctgctggcgcgcatggtgcgcgcgcggctgctggaacttcgcgagcgtgacttc
gtgatggcggcaagaggcatgggggcgggcctgccgcatctcctcctccgccacggcctg
ccgaattcgatcgacatcctcgttgtcttcgcgacgctgcagatcgccaatgccatcctg
ctcgaggccggactttccttcctcgggctcggcattgcgccgccggcggcaagctggggc
aacatgctgaatgccgcccgctctaccgcagtgctcgaacaatacccctggcagtggctg
tttcccggcggctttctggtgcttgccgtcctggcaatcaacttcattggcgatggtctt
cgcgatgccttcgaccctcgcgccgaattaaactga
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