Rhizobium etli CFN 42: RHE_CH01627
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Entry
RHE_CH01627 CDS
T00317
Symbol
dnaEch1
Name
(GenBank) DNA polymerase III alpha subunit protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03030
DNA replication
ret03430
Mismatch repair
ret03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHE_CH01627 (dnaEch1)
03430 Mismatch repair
RHE_CH01627 (dnaEch1)
03440 Homologous recombination
RHE_CH01627 (dnaEch1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ret03032
]
RHE_CH01627 (dnaEch1)
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH01627 (dnaEch1)
Enzymes [BR:
ret01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RHE_CH01627 (dnaEch1)
DNA replication proteins [BR:
ret03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RHE_CH01627 (dnaEch1)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RHE_CH01627 (dnaEch1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
McdB_C
Motif
Other DBs
NCBI-ProteinID:
ABC90426
UniProt:
Q2K9R0
LinkDB
All DBs
Position
1707959..1711456
Genome browser
AA seq
1165 aa
AA seq
DB search
MAETEKGSTGEATGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDNQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGLESEKRGGQQALIKLPSIVLLAATEAGYER
LVDLVSRAYLGGDSNQAVHIRASWLEEAGTEGLIALTGALTGPVDAAVREGHPAQAEARL
LTLKRLFGDRLYVELQRHGTYDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMARLFADLPEALENTIEIAKRCSFVLKTRKPI
LPRFTGATDDAEEAERAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRERLEFELSVIE
RMRFPGYFLIVSDFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGINVDLAAIPLDDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPVYNARKHGEEEVESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVEGAVKNGVKKPQADVIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHF
ETGDNRIYYALAALKGVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYA
GAFDCFGTDRAQLAAGLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKISLPPYSPWLA
SERLLKEFQVLGFYLTAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFLLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHLNAKGDGLVSFIVIKEEGKREVEVALP
EKYRITAEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggagacggaaaagggttcaacgggtgaggcgaccggcggcacgccgggcttcatc
cacctgagggtccattccgcctattcgcttcttgagggcgcgctgccgctgaagaagatc
ctctacaaggcgaccggcgacaatcagccggcaatcgccattaccgataccaacaacctg
tttgtcgcccttgaattctcgcagaaggcaatggacgagggcctgcagccgatcatcggc
tgccaagtctccatcgacatggaagacggattggaaagcgaaaagcgcggcggtcagcag
gccctgatcaagttgccgtcgatcgttcttcttgccgcgacggaggccggttacgaaagg
ctggtcgatctcgttagccgcgcctatctcggcggcgacagcaatcaggccgttcatatc
agagcttcctggctggaagaggcaggtacggaagggctgatcgccttgaccggcgcgctg
accgggccggtcgacgcagctgtcagggaaggtcaccccgcccaggcggaagcccggctg
ctcacgctgaagcgtctcttcggcgacagactctatgtcgagctgcagcggcacggcacc
tacgacaagcggcatgagcagaagatcgtcaggcttgcttacacgcatgacctgccgctc
gtcgccacaaacgaggccttctttcccacccgcgacgattacgacgcccatgatgcgctg
atggcggttgcgcataacgccatcgtctccgacgacagccgctttcgcctgacgcctgat
cactacctgaagagccgcgccgagatggccaggctcttcgccgacctgccggaagcgctt
gagaacacgatcgagattgccaagcgctgctccttcgtgctgaagacgcgaaagccgatc
ctgccgcgcttcaccggtgcgactgatgatgccgaggaggccgagcgcgccgaggcgggc
gaattgcgtcgccaggcggtcgaagggctggacatgcggcttgccacgctaggcatgtcg
ccgggctacgaggaaaaggattatcgcgagcgactggagttcgagctcagcgttatcgag
cgcatgcgcttccccggttacttcctgatcgtttccgacttcatcaaatgggccaagcag
catgatattccggtcggccccggccgtggttcgggcgccggttcgctggtcgcctatgcg
ctgacaatcactgacgtcgaccccttgcgcttctcgctgctcttcgagcgcttcctcaat
ccggaacgcgtctcgatgccggacttcgatatcgacttctgccaggatcgccgcgaagag
gtgatccgttacgtccaggcgaaatatggtcgcgaacaggtggcgcagattatcaccttc
ggttcgctgcaggcccgcgcagcacttcgcgacgttggccgcgtgctggaaatgccctac
ggccaggtcgacaagatctgcaagcttgttccgaacaatccggccaatccgacgccgctc
tccaaggcgattgaggaagagccgaagctgcaggaggaggcggcgaaggaaccagtggtc
gcgcgcctgctcgacatcgcccagaaaattgaaggcctttatcgccatgcctcgacgcat
gccgccggtattgtcatcggtgatcggccgctgtccaaactcgtgccgatgtatcgcgat
ccgcgttctgacatgccggtcacccagttcaatatgaagtgggtggagcaggccggcctc
gtcaaattcgactttctcggtctgaagacgttgacggtcctgaaggtcgccgtcgatttt
gtcgccaagcgcggcatcaatgtcgatctcgccgccattccccttgacgacaagccgacc
tacgaaatgctgtcgcgcggcgagacggtcggcgtgttccaggtggaaagtgcgggcatg
cgcaaggccctgatcggcatgaagccggactgtatcgaggatatcatcgcgctggtagct
ctttaccgcccgggcccgatggagaacattcctgtctataacgcccgcaagcacggcgag
gaggaggtggaatcgatccacccgacaatcgaccatctcctcaaggaaacccagggcgtc
atcgtttaccaggagcaggtgatgcagatcgcccaggtcctgtcgggctattccctcggc
gaagccgaccttctgcgtcgcgccatgggcaagaagatcaaggccgagatggaccagcaa
cgcgagcgcttcgtcgagggcgccgtgaaaaacggggtgaagaaaccgcaggccgacgtc
atcttcgatctgctggcgaaattcgccaattacggcttcaataagtcgcacgccgccgcc
tacgccatcgtctcctaccagacggcctatatgaaggcgcattatccggtcgagttcctc
gccgcttcgatgacgctcgacatgtccaacacggaaaaggtcaatgatttccgtcaggat
gcgaagcgcctcggcatcgaggtgatcgcgccctccgtgcagacctccttccgccatttc
gagaccggcgacaaccgcatctattatgcgctggccgccctcaagggcgtcggcgaatcc
gccgtcgaccacattgtcgaggtgcgtggcgacaagccctttgccagcatcgaggatttc
tgtctgcgcatcgatccgcgccaggtgaaccgccgcgtgctcgaaagcctgatctatgcc
ggcgccttcgattgtttcggcaccgaccgcgcccagcttgccgccggccttgaccgcatc
ctcggttatgcccagcgcgctcaggaaaacaagctgagcggccagtcggatattttcggc
agcgcgctaaactcaggtccggaaaaaatctccttgccgccctattcgccctggctggca
tcggagcggctgctcaaggaattccaggtgctgggcttctatctaaccgcccacccgctc
gattcctacaacaacatcttgcagaagatgcgcgtgcagacattcgccgagttttctgcc
gccatcaaacagggcgccgccaatgcgcgccttgccggaaccgtcatctcgaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttttccgattcctcggggcag
ttcgaggcggtgcttttttcggagatgctgaaccagtatcgcgacgtgctcgagtccggg
aaatccttcctgctgaccgcgaccggtgaggagcggccggagggtatcggtctgcgcatc
cagacgatccagtcgcttgaggaaaagtcgctgcagatgcagaaggcgttgcgcgtctat
atcagagattccggaccgctgaaaatggtcgccggtcatctgaacgccaagggcgacggc
ttggtttccttcatcgtcatcaaggaagagggcaagcgcgaggtcgaagtggcgctgccg
gagaaataccgcatcacagcggagatcgccgccgcccttcgcgcagcccccggcgtcgtc
gacgtcgagcttgtttga
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