Rhizobium etli CFN 42: RHE_CH01637
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Entry
RHE_CH01637 CDS
T00317
Symbol
rnr
Name
(GenBank) exoribonuclease protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHE_CH01637 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ret03019
]
RHE_CH01637 (rnr)
03016 Transfer RNA biogenesis [BR:
ret03016
]
RHE_CH01637 (rnr)
Enzymes [BR:
ret01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RHE_CH01637 (rnr)
Messenger RNA biogenesis [BR:
ret03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHE_CH01637 (rnr)
Transfer RNA biogenesis [BR:
ret03016
]
Prokaryotic type
tRNA degradation factors
RHE_CH01637 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
FaeA
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ABC90436
UniProt:
Q2K9Q0
LinkDB
All DBs
Position
complement(1720806..1723175)
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AA seq
789 aa
AA seq
DB search
MSRTPRDRTNLAGKRPGKIGRAGRDVSAVEPLNIVHGTLPSREVILRFIADHPQKASKRE
LAKAFGLKGDSRVELKHMLQELEQEGMLQKSRKSLIRPGALPPVTVLDITTRDKDGDLIG
RPAEWPEEQGVAPAVAIRQQSPAGRQKGKAPVAGLGDRILAKIFPAVDRGGPAYTARIIK
VIDRRRGAAMGVFRSAPGGGGRLLPIERRGEEMVIDPDYTGGAEDGDLVEIEVARLGRFG
LPRAKVLSVVGSVGSEKAISTIAIHAHGIPHVFPPAVIAEAEAAKPATMSHREDWRDVPL
ITIDPADAKDHDDAVYAELDPSPDNPGGVIVTVAIADVSWYIRPNSPLDREALKRGNSVY
FPDRVVPMLPERISNDLCSLKEGVDRPALAVRMSFSGEGRKIGHTFHRIMMKSAGKLSYQ
QAQAAIDGRPDDKTGPMLETILKPLWHAYGVMKRGRDRRQPLELDMPERKILLKPDGTVD
RVFVPPRLDAHKLIEEMMIQANVCAAETLEKKRQPLVYRIHDGPTLAKQEVLREFLATLG
ISLAKGGNVRANSFNGILAKAEGTAHQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAH
FTSPIRRYADLIVHRALVGSLGLGEGGITPDEEASLDDIAAEISTFERRAMAAERETIDR
LIAHHLSTRVGEEFAGRVSGVTKSGLFITLPDYGADGFVPISTLGTDYFIYDEAHQALSG
EKTGLGYRLGDSVTVKLAEAIPLAGALRFEMLSEGREMPTAVRSFHKAGRRDRDQVRKKP
GTRPPRGRR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaggacaccgcgcgataggacgaacctcgcgggcaagcgcccgggcaagatcggc
cgcgccggcagggatgtttccgccgtcgaaccgctgaacatcgtccacggcacgctgcca
tcgcgcgaggtgattctgcgtttcattgccgatcatccgcagaaggcttccaagcgtgaa
ctcgccaaggcgttcggcctgaaaggcgacagccgcgtcgagctcaagcacatgctgcag
gagctcgaacaagaaggcatgctgcaaaagagtcgcaagtcgctcattcgtcctggcgct
cttccgcccgtcaccgttctcgacatcacgacgcgtgataaggacggtgacctgatcggc
cggccggcggaatggccggaggagcagggtgtggcaccggccgtcgccatccgtcagcaa
tcgcccgcaggccgccagaaaggcaaagcgcccgtcgccggcctcggcgaccgtatcctg
gcgaagatcttcccggccgtcgatcgcggcgggccagcttatacggcgcgtatcatcaag
gtgatcgataggcgccgcggtgcggcgatgggcgtcttccgcagcgcgcccggcggcggc
ggccggctgctgccgatcgaacgacgcggcgaagagatggtaatcgatcccgactatacc
ggcggcgccgaggacggcgacctggtcgagatcgaagtcgcgcgcctcggacgtttcggc
ctgccgcgtgccaaggtcctctccgtcgtgggctcggtcggctccgaaaaggcgatctca
acgatcgcgatccatgcgcacggcatcccgcacgtcttcccaccggccgtgatcgccgag
gcggaagctgccaaacccgccacgatgtcgcatcgggaggattggcgcgacgtgccgctg
atcaccatcgacccggccgacgccaaggaccacgatgacgcagtttacgccgaactcgac
ccctcgcccgacaatcccggcggcgtcatcgtcactgtcgcgatcgccgacgtctcctgg
tatatccgccccaattccccgctcgaccgcgaagcgctgaagcgcggcaactcggtctat
ttccctgatcgcgtcgtgccgatgctgccggagcgcatctccaacgatctctgctcgctg
aaggaaggtgtcgaccgcccagcgctcgccgtgcgcatgagcttctcaggcgaaggccgc
aagatcggccatacgtttcatcgcatcatgatgaagagtgccggcaagctctcttatcag
caggcacaggcggcgatcgacggaaggccggatgacaagaccggaccgatgctcgagacg
atcctgaaaccgctctggcacgcctatggagtaatgaagcgcggacgcgaccggcgccaa
ccactggaactcgacatgccggagcggaagatcttgctgaagccagacggcaccgtcgac
cgggtcttcgtgccgccgcggctcgatgcgcacaagctgatcgaagagatgatgattcag
gcgaatgtctgcgccgccgaaacgcttgaaaagaagcgtcagccattggtctaccgcatc
catgacggcccgacccttgccaagcaggaagtcttgcgcgaattcctggcgacactcggc
atctcgcttgccaagggcggcaatgtgcgcgccaacagcttcaacggcattctcgcaaaa
gccgaaggcacggcgcatcagaccatggtcaacgaaatggtgctgcgctcgcagagccag
gcaatctacagtccggagaatatcggtcacttcggcctcaatctgatgaaatacgcccac
ttcacatcgccgatccgccgctacgccgatctcatcgtgcatcgcgcgctcgtcggttcg
ctcggcctcggcgaaggcggcatcacgcccgacgaagaagcctcactcgacgatatcgcc
gccgagatctcgaccttcgagcgccgggcgatggcggccgagcgcgagaccatcgaccgg
ctgatcgcccatcatttgagcacccgcgtcggcgaggagttcgccggccgcgtctccgga
gttaccaaatccgggctgtttatcaccttgccggattatggcgccgacggtttcgtccct
atatctacactcggtaccgattatttcatctatgacgaggcgcatcaggcgctctcgggt
gaaaagacgggcctcggctatcgtcttggcgacagcgtcaccgtgaagcttgcggaagca
atcccgcttgctggcgcgctgcgtttcgagatgctgagcgaaggacgcgagatgccgacg
gcggtgcgttccttccataaggccggccgccgcgacagggaccaggtccgcaagaaaccg
ggaacgcgtcccccgcgcggacgccgctaa
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