Rhizobium etli CFN 42: RHE_CH01668
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Entry
RHE_CH01668 CDS
T00317
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta` chain protein
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHE_CH01668 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ret03021
]
RHE_CH01668 (rpoC)
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH01668 (rpoC)
Enzymes [BR:
ret01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHE_CH01668 (rpoC)
Transcription machinery [BR:
ret03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHE_CH01668 (rpoC)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHE_CH01668 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ABC90463
UniProt:
Q2K9M3
LinkDB
All DBs
Position
1758516..1762724
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNGQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLTEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPATKAKIVADTENL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
VLRNSEGSLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPASGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMAENAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatgggcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgtgacggtctgttctgcgcg
cgcatcttcgggccgatcaaggattacgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccacatctggttcctgaagtcg
ctgccgtcgcgcatttcgacactgctcgacatgacgctgaaggatgtcgagcgcgttctc
tacttcgaaaattacatcgtcaccgagccgggcctgaccgcgctcaaggagcatcagctc
ctgacggaagaagagtacatgctcgccgtcgacgaatacggcgaggaccagttcaccgcg
atgatcggcgctgaggcgatctacgagatgctggcctcgatgaacctcgaaaagatcgcc
ggcgatttgcggtccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtcgggcaatcgtccggaatggatgatc
atgaaggtcgttccggtcatcccgccggatctgcgcccgctcgttccgctcgacggtggc
cgtttcgcgacgtcggatctgaacgatctctatcgccgcgtcatcaaccgtaacaaccgc
ctgaagcgcctgatcgaactgcgtgctccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatccgtcgatgcgctcttcgataacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtcccctgaagtcgctgtccgatatgctgaagggcaagcagggtcgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcatcagtgcggtcttccgaagaagatggcgctggaactcttcaag
ccgttcatctatgcgcgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtttgggacatcctcgacgaggtcatccgcgaa
catccggttctcctgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggctgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgtgtcctgatgatgtcgaccaacaacatcctgcacccggcaaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctgtactatctttcgatcctgaaccag
aacgagccgggcgaaggcatggccttctcggatctcggcgagctgcatcacgccctcgag
agcaaggtcgtgacgctgcacaccaagatccgcggccgcttcaagtcggtcgacgaggat
ggcaagccctactcgaagatctatgagacgacacctggccgcctgcttatcggcgaactg
ctgccgaagaacggcaaggtgcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccactgcggccagaaggacacggtcattttc
tgcgaccgcatcatgcagctcggctttagccatgcctgccgcgccggcatttcgtttggc
aaggacgacatggtcattccggccaccaaggcgaagatcgttgccgacaccgaaaatctg
gtgaaggaatacgagcagcagtacaatgacggcctcatcacccagggcgaaaagtacaac
aaggttgtggacgcctggggcaaggcgactgaaaaggtcgccgaagagatgatggcgcgc
atcaaggcggtcgaattcgacgagaacaccggccgtcagaagccgatgaactcgatctat
atgatgagccattccggcgcccgcggttctccgaaccagatgcgccagctgggcggtatg
cgcggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacgcacggcgcccgcaagggtctg
gcagacaccgccttgaagaccgcgaactccggctacctgacccgtcgtctcgttgacgtc
gcgcaggattgcatcgtcacgcacgtcgattgcggcaccgaaaccggcctgaccatgacc
gccatcgtcgatgccggccaggtcgtcgcctcgctcggcgcccgtatcctcggccgcacg
gcactcgacgacatcgatcatccggtgacgggtgagcgcatcgtggatgccggcaagatg
atcctcgagcctgacgtcatcgagatcgagaaggccggtatccagtcgatccgcatccgc
tcggcgctgacctgcgaaatccagacgggtgtctgctcggtctgctacggccgcgacctc
gcccgcggtacgcctgtcaatatgggcgaagccgtcggcgtcatcgccgctcagtcgatc
ggcgagccgggaacccagctcaccatgcgtaccttccaccttggcggtacggcgaccgtg
gtcgaccagtcgttcctcgaagcctcgtacgaaggtacggtgcagatcaagaaccgcaac
gtcctgcgcaactcggaaggcagcctggttgccatgggccgcaacatgaccgtccagatc
ctggacgagcgtggtgtcgagcgctcctcgcagcgtgtcgcctacggttcgaagctgcac
gtcgacgaaggtgacaaggtcaagcgcggtcagcgtctggccgagtgggacccgtacacc
cgcccgatgatgaccgaagtcgccggtaccgttcagttcgaggatctcgtcgacggtctc
tcggttctggaggcgaccgacgaatccaccggcatcaccaagcgccaggtcatcgactgg
cgttcgaccccacgcggctcggacctcaaaccggcgatcgtcatcaaggacgccagcggc
aatgtcgccaagctgtcgcgtggcggtgacgcccgcttcctgctctcggtcgatgctatt
ctgtcggtcgagccgggcacgaaggtctcccagggtgacgttctcgcccgttcgccgctc
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgaactgttcgaa
gctcggcgtccgaaggaccacgccatcatcgcagagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgtgtcatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggacggcgactatatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtggaggctctggcttcctacctcgtcaacgaaatccaggaagtctaccgcctgcagggc
gtcgtcatcaacgacaagcacatcgaagtgatcgtccgtcagatgctgcagaaggtggag
atcaccgatgcaggcgactcgacctacatcgtcggcgacaacgtcgaccggatcgagctg
gaggacgtcaacgaccacctgatcgagcagggcaagaagcctgccagcggcgagccggtc
cttctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcgtccttc
caggaaacgaccaaggtgctgacggaagctgcaatcgccggcaaaaccgacggtctgcag
ggtctcaaggaaaacgtcatcgtcggccgcctcatcccggccggcaccggcggcaccatg
acccagatccgccgcatcgccacgtcgcgcgacgagctcatcctcgaagagcgccgcaag
ggcaccggggcagcggtcgccaccccgatgctgcaggacatggccgaaaacgctccggct
gcggaatga
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integrated database retrieval system
