Rhizobium etli CFN 42: RHE_CH01879
Help
Entry
RHE_CH01879 CDS
T00317
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03410
Base excision repair
ret03430
Mismatch repair
ret03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHE_CH01879 (recJ)
03430 Mismatch repair
RHE_CH01879 (recJ)
03440 Homologous recombination
RHE_CH01879 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH01879 (recJ)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RHE_CH01879 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RHE_CH01879 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHE_CH01879 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABC90670
UniProt:
Q2K916
LinkDB
All DBs
Position
1964131..1965933
Genome browser
AA seq
600 aa
AA seq
DB search
MADLVDPVPRAFLGVEKSALDNRWVARLDQAGQNRALAMAQVHGLPDLIARVLAGRGVRV
DEAIEFLDPTIRSLMPDPHTLTDCEKAATRLVRAIERGESVAIFGDYDVDGAASSALMFR
FLSHFGVKANIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNI
DVVVIDHHQVTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRI
MALDLLQWLDIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVT
PYHFGFLIGPRINAGGRIGDAALGSRLLTLDDAGEAEVIAQRLDELNRERQAMEAMMLQE
AEAEALAEYGDGEGASIIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSG
RSINGFDMGRMVRAAVEEGILVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVASLVA
NETLKIDGAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTL
EAMDGSRLDGIAFRAADTGLGNLLINSRGASLHVAGSLGAEHYQGARRIQLRVCDAAPAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcagatctcgtcgatccggtaccgcgcgcgtttctcggcgtggagaaatccgcactc
gacaatcgctgggttgcaagactcgatcaggccggccagaaccgggcgctcgccatggcg
caggttcacgggctgccggatctgatcgcccgtgttctcgcaggacgcggcgtccgggtg
gacgaggcgatcgaattcctcgatccgacgatccgcagcctgatgcccgatccccacacg
ctgacggattgcgagaaggcggctacccgcctcgtgcgtgcgatcgagcgcggcgagagc
gtggcgattttcggcgattatgacgttgacggcgcggcctcctcggcgctgatgttccgc
tttctcagccatttcggggtcaaggcgaacatctacattcccgatcgcatctttgaaggc
tacggccccaatccggcggcgatcaaccagctgatcgacaatggcgctcggctgatcgtc
accgtcgattgcggctccaccagccacgaggcgcttgcggcggctgcggcgcgcaatatc
gatgtcgtcgttatcgatcaccaccaggtgacacatgagctgccgccctgccatgcgctg
gtcaacccgaaccgcgaagacgatctgtcggggcaggggcatctgtgcgcggccggcgtc
gtcttcatggtgctggtcgcgacgctgaggctgctgcgagcggccggcaacaagcgcatc
atggccctcgacttgttgcaatggttggatatcgtggcgcttgcgacagtctgcgatgtc
gtgccgctgaaggggctcaaccgcgcctatgtggtgaaggggctggtcgccgcccgccac
cagagcaatgccggccttgccgcgctcttccgcaaggcggggctcgcggggcccgtgacc
ccctatcatttcggcttcctgatcggcccacgcatcaatgccggcggccggatcggtgac
gccgcactcggaagccgcctgctgacgctcgatgatgccggcgaggcggaggtgatcgcg
cagcgcctcgacgagctcaaccgtgaacgtcaggcgatggaggcgatgatgctgcaggag
gcggaagccgaggcgcttgccgaatatggcgacggcgagggcgcctccatcatcgtcacc
gcccatgagaagtggcatccgggcatcgtcgggctgatcgccgcgcggctgaaggagaaa
ttcaagcggcccgccttcgcgatcgctttcgatccctccggccgcggcaccggctcaggc
cgctccatcaacggcttcgacatgggcaggatggtgcgggctgcggtcgaggagggcatc
ctcgtcaagggtggcggccatgccatggcggccgggctgacggtcgagcgcgccgatctc
ggcaggttgaggaccttctttacggagaaggccgcaaggacggtggcgagcctcgtcgcc
aacgagacattgaagatcgatggcgcgatcggcgccagcggcgccacgcttgaactcatt
gaccgcctggaagccgccggcccctatggctccggccacgcccagccgctctttgccgta
ccggcgcatcgggtgcgagatgcgcgcctggtcggcgagaaacatgtgaaggtgacgctg
gaggcgatggacgggtcgcggctcgacggtatcgccttccgcgccgccgatactggtctc
ggcaatcttctcatcaactcacgcggcgcgagcctccatgtcgcaggctcgctcggcgct
gaacattatcaaggcgcgcgccgcatccagctgcgcgtctgcgatgcagcgccggcgaaa
tag
DBGET
integrated database retrieval system
