Rhizobium etli CFN 42: RHE_CH02095
Help
Entry
RHE_CH02095 CDS
T00317
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TRCF) protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHE_CH02095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH02095 (mfd)
Enzymes [BR:
ret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHE_CH02095 (mfd)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RHE_CH02095 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABC90879
UniProt:
Q2K8F7
LinkDB
All DBs
Position
2191936..2195439
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAVAEPLTIGNVPTGLEPLLLAELARAGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPHDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRVVTDHTVREAAEERSKL
VLDYYDARLNSGQPAKGQMAQGTPYKPVTPGQLYLDSKHFTKTLDALGAIRISPFNEHEG
EARRVINVDARQGQRWARSNAEGGGDAERVNIFDIVVKHIADRRAAGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPVEALKDIRSLEKGEAAAAVLNLESGFEAGELVVIGEQDILGDR
MVRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPVLTTPDGLYDEFAARFPYDETEDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKK
EVADGKTDIVVGTHALLGAGIKFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPENYVPDLHLRMALYRRLGEITDLKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEMAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccgttgccgagccgctgacgatcggc
aatgtgcctaccggtctcgaaccgctgctgctggccgagcttgcccgagcgggagaaccc
gtcgcctatgtcatgtcggacggccaccgcatggccgatctggaacagatgctcggcttc
gtcgcccccgacattccggttctcaccctgccggcctgggactgtctgccctatgaccgc
gtttcgccgagcgccgatacttcggcccgccggcttgccgcgctcggcggcctcatcgcc
catcgcaagaagccgcacgccgcgatcgtgctcgtcaccgccaacgccatgctgcagaag
gtggcgccgcatgatgtcatcgaaagtctgagtttttcggcccgtcccggcaaccagctg
cgcatggatgatctcgcaggccgcctggagcgcaacggcttcgaccgcgtcgcgaccgtg
cgcgaggtcggcgaatatgccgtgcgcggcggcattctcgatgtcttcgtgccgggttcg
gaagagccggtccgccttgatttcttcggcgatacgctggaatcgatccgcagcttcgac
ccggcgagccagcgcacgaccggccaggtgcgctcgcttgatctcaatccgatgagcgaa
gtgacgctgacgcccgatacgatcagccgcttccgcaagaactatctctcggctttcggc
gcgacgacgcgtgatgatgcgctttatctcgccgtctccgaaggccgccgctacccgggc
atggagcattggctgccgctcttttacgagaagctcgataccgttttcgattatctcagc
ggcttccgtgtcgtcacggaccatacggtgcgtgaagcagccgaagagcgctccaagctc
gtcctcgattattacgacgcccgcctgaattccggccagccggccaagggccagatggcg
cagggcacgccctacaagccggtgacgccgggccagctctatctcgacagcaagcatttc
accaaaaccctcgacgcgctcggcgcgatccgcatcagcccgttcaacgagcatgaaggc
gaggcgaggcgggtaatcaatgtcgacgctcgccaaggtcagcgctgggcacgctccaat
gccgaaggcggcggcgatgccgagcgcgtcaatatcttcgacatcgtcgtcaagcatatc
gccgaccgccgcgccgccggcgcaaaagtgctcgtcaccgcctggaccgagggctcgctg
gaacgcctgctgcaggtgttgaacgaacacggcctggaaaaggtcaagcctgtcgaggca
ctgaaggatatacgctcgctggagaaaggcgaggccgctgccgcggtgctcaatctcgaa
tcgggcttcgaggcgggcgagctcgtcgtcatcggcgagcaggatattcttggcgaccgc
atggtccgccgttccaagcgccgcaagcgcgccgccgatttcatctcggaggtcgcaggc
ctcgacgagggctcgatcgtcgttcatgccgaacatggcatcggccgcttcatcgggctg
aagaccattgaggcggcgggcgccccccatgcctgcctcgagctgcagtatgccgacgag
gccaagcttttcctgccggtcgagaatatcgaccttctctcccgctatggcggcgagggc
accgatgcccaactcgacaagctcggcggcggcgcctggcagatgcgcaaggccaaactc
aagaagcggctgctcgatatggcggacgcgctgatccgaatcgccgccgagcgcctgact
cgccatgcgcctgttctgacgaccccggacgggctttacgacgagtttgccgcccgcttc
ccctatgacgagaccgaggaccaggacaatgccatcgaggcggtgcgctccgatctcggc
gccggccggccgatggatcgcctagtctgcggtgacgtcggcttcggcaagacggaagtg
gcgctgcgcgccgccttcgtcgctgcgatgaacggcgtccaggttgccgtcgtcgtgccg
acgacattgcttgcccgccagcatttcaagactttttccgagcgattccgtggcctgccg
gtgcgtgtccagcaggcctcccgccttgtcggcgccaaggatctggcgctgaccaagaag
gaagtggcggacggcaagaccgacatcgttgtcggcacccatgcgctgctcggcgccggc
atcaagttcgccaatctcggcctgctcatcatcgacgaggagcagcatttcggtgtcaag
cacaaggagcggctgaaggagctgaagagcgacgtccacgtgctgacgttgtcggcaaca
ccgatcccgcgcacgctgcagctcgccatgaccggggtgcgcgagttgtcactgatcacc
acgccgccggtcgaccgcatggcggtgcgcaccttcatctcgcccttcgacagtcttgtc
atccgcgagacactgatgcgcgagcactatcgcggcggccagagcttctacgtctgccct
cggcttgccgatctagcggatgtgcatgccttcctgcagtccgacgtgccggagctgaag
gtcgccgtcgcccacggccagatgccggccggcgaattggaagacatcatgaacgccttc
tatgaaggccgctatgacgtgctgctgtcgaccaccatcgttgagtccggcctcgacgtg
cccacggccaatacgctgatcgtccaccgcgccgacatgttcggccttgcccagctctac
cagctgcgcggccgcgtgggccgctcgaaagtgcgcgccttcgcgctattcaccctgcct
gtgaacaaggtgctgacggcgacggccgaacggcggctgaaggtgctgcagtcgctggat
acgctcggcgccggcttccagctggcaagccatgacctcgatatccgcggcgcaggcaac
ctgctcggcgaggagcagtccggccacatcaaggaagtcggcttcgagctttatcagcag
atgctggaagaggcggtcgccgaggttaagggtgtcgacgaaatccacgataccggctgg
tcgccgcaaatctccgtcggcaccacggtgatgatccccgagaactatgtgcctgacctg
catctgcggatggcgctctatcgccgtctcggcgaaatcactgacctcaaggagatcgac
ggcttcggcgccgagatgatcgaccgcttcgggccgatgccgatcgaagtccagcatctg
ctgaagatcgtctacatcaagtcgctttgccgcaccgccaatgtcgaaaagctcgatgcc
ggcccgaagggcgtggtcgtgcagttccgcaacaaggaattccccaacccggcaaacctc
gtcggctatatcggcaagcagggcacgatggcgaagatccgccccgatcacagcctgttc
ctgacccgcgacctgccgacaccggaaaaacgcctgcagggcgctgccgtgatcatgacg
caactggccgagatggcgaaatag
DBGET
integrated database retrieval system
