Rhizobium etli CFN 42: RHE_CH02890
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Entry
RHE_CH02890 CDS
T00317
Name
(GenBank) probable ABC transporter, substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
ret
Rhizobium etli CFN 42
Pathway
ret02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RHE_CH02890
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ret02000
]
RHE_CH02890
Transporters [BR:
ret02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RHE_CH02890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_6
SBP_bac_8
SBP_bac_1
SBP_bac_11
Motif
Other DBs
NCBI-ProteinID:
ABC91658
RhizoBase:
RHE_CH02890
UniProt:
Q2K678
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All DBs
Position
3022404..3023507
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AA seq
367 aa
AA seq
DB search
MISNISRLLSLSTAIVVASTAIAAAEPSAELIAAAKKEGTLTTIALPHDWCGYGDVIAGF
KAKYGLEVNELNPDAGSGDEVEAIKANKGNTGPQAPDVIDVGLSFGPSAKKDGLIQPYKV
STWDSIPDTAKDPEGYWYGDYYGVLSFLVNKDLVKESPVDWADLKKSDYANTVALAGDPR
TANQAVQGVYAAGLSASGGDAAKAGEEGLKFFAELNKAGNFVPVVGKAAPFAQGSTPIIV
AWDYNAMSWGESLKGNPPFEVVVPKTGVVAGVYVQAISAFAPHPNAAKLWMEYLYSDEGQ
LGWLKGYCHPIRFNDLAKNNKIPKELLDKLPPAAAYEKAVFPTLEEQAAGKETITKNWDS
VVGASVK
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
gtgatctctaacatttctcgactcctgtcgctttctactgcgatcgtcgtggcttcgacc
gcgattgccgcagctgaaccgagcgcagaacttatcgctgccgccaagaaggaaggcacg
ctgaccacaatcgctctcccgcacgactggtgcggctatggcgacgtcattgccggcttc
aaggctaaatatggtctcgaggtcaacgaactgaacccggatgcgggttcgggcgacgaa
gtcgaagccatcaaggccaacaagggcaataccggcccgcaggcgcccgacgtcatcgac
gttggcctctccttcggtccgtccgccaagaaggacggcctgatccagccttacaaggtt
tccacctgggactcgatcccggatacggccaaggatcccgaaggctactggtatggcgac
tattacggcgttctctcgttcctcgtgaacaaggatctcgtcaaggaatcgccggtcgac
tgggccgacctgaagaagagcgactacgcaaacaccgtcgctctcgcaggcgatccgcgc
acggccaaccaggctgtccagggcgtttatgccgctggcctttccgcatccggcggtgac
gcggccaaggcaggcgaagaaggcctgaaattctttgccgaactcaacaaggccggcaat
ttcgtacctgtcgtcggcaaggcggctccgttcgctcagggctcaacgccgatcatcgtc
gcctgggactacaacgcaatgtcctggggtgaaagcctgaagggcaacccgccgttcgaa
gtcgtcgttccgaagacgggcgtcgtcgccggcgtttacgtccaggcgatttctgccttc
gctccgcacccgaacgctgccaaactctggatggaatatctctattccgacgaaggtcag
ctcggctggctgaagggctattgccacccgatccgcttcaacgatcttgctaagaacaac
aagatcccgaaggaactgctcgacaagctcccgccggcagcagcctatgaaaaggctgtc
ttcccgacgctcgaagagcaggccgccggcaaggaaaccatcaccaagaactgggattcc
gtcgtcggcgccagcgtcaagtaa
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