Rhizobium etli CFN 42: RHE_CH02953
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Entry
RHE_CH02953 CDS
T00317
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHE_CH02953 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ret03019
]
RHE_CH02953 (recQ)
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_CH02953 (recQ)
Enzymes [BR:
ret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHE_CH02953 (recQ)
Messenger RNA biogenesis [BR:
ret03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHE_CH02953 (recQ)
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHE_CH02953 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABC91720
UniProt:
Q2K616
LinkDB
All DBs
Position
complement(3082707..3084575)
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AA seq
622 aa
AA seq
DB search
MPLSERNAPGFSASDALFSAGRSPLDVLKQVYGYSSFRGKQQKVVEHIVSGGDALVLFPT
GAGKSLCFQIPALCRDGVGIVVSPLIALMRDQVEAMKQLGIRAAALNSSLSREEFVQVRR
ALSAGKLDLLYVTPERILTDAFRELIASEKIALFAIDEAHCVSQWGHDFRPEYRELGRLG
EQYPGVPRVALTATADPHTRDDIIERLGLGNAEIFTTSFDRPNIAYEIVERDQPRQQLLR
FLSGHKGNSGIVYCLSRAKVEDTADWLNGQGIRALPYHAGMDRALRDSNQDAFLKEENLC
LVATVAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRR
RMIDEGNAADEIKRVERAKLNALLAICETASCRRQAILAHFGEAHAGQCGNCDTCLKPVE
TWEGTEAAIKALAAVYRTGERFGAGHVIDVLVGNINEKTERFGHVNMPVFGAGKDIPART
WQSVYRQLLAMGLIRIDHEAYGALKLEPEARAVFKSERQVFFRKDRPASEPRTKKAERSE
RKSALSGADGSLFEALRAERMAIAKSLGVPPYVVFPDTTLIAFATERPRSRKELLGISGV
GQAKLDRYGDAFLEIILSHDKD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcagcgaacgcaatgcaccaggtttttccgcttccgatgcgctgttttccgcc
ggccgttcgccgctcgacgtcttgaaacaggtctatggttattcctccttccgcggcaaa
cagcagaaggtggtggagcatattgtttccggcggcgatgccctggtgctttttccgaca
ggcgcgggcaaatcgctgtgcttccagatcccggcgctttgccgcgacggcgtcggcatc
gtcgtctcgccgctgattgcgttgatgcgcgatcaggtggaggcgatgaagcagctcggc
attcgcgctgcggcgctgaattcgtcgctgtcgcgcgaggagttcgtccaggtccgccgg
gcgctttcggcgggaaagctcgatcttctctacgtgacgcccgagcgcatcctgacggac
gctttccgcgagctgatcgccagtgagaagatcgcgctgtttgcgatcgacgaggcccac
tgcgtctcgcaatggggccatgatttccgcccggaatatcgcgagctcggccggctcggc
gaacagtatccgggcgtgcctcgcgtggcgctgacggcaacggccgacccgcatacgcgt
gacgatatcatcgagcggctgggactcggcaatgccgaaatcttcaccaccagcttcgac
aggccgaatattgcctatgaaatcgtcgagcgcgaccagccgcgccagcagcttctgcgc
ttcctctccggccataagggcaacagcggcatcgtctattgtctgtcgcgcgccaaggtc
gaggatactgccgattggctgaacgggcagggcatccgcgcgctgccctatcatgccggc
atggaccgggcactgcgcgacagcaatcaggatgctttcctgaaagaagagaatctctgc
ctggtcgcgaccgtcgccttcggcatgggcatcgacaagccgaatgtgcgctatgtcgcc
catctcgacctgccgggttcggtggaggcctactatcaggaaaccgggcgcgccggccga
gacgggctgccgtccgaggtctggatggcctatggcatggccgacgtcatccagcgccgc
cgcatgatcgatgagggcaacgccgcagacgaaatcaagcgggtcgagcgcgccaagctg
aacgccttgctggcgatctgcgaaaccgcctcctgccgccggcaggcgatccttgcccat
ttcggcgaggcgcatgccggccaatgcggtaattgcgacacctgcctgaagccggtcgag
acctgggaaggcacggaagcggcgatcaaggcgctcgctgccgtctaccgcaccggcgag
cggttcggcgccggtcatgtcatcgacgtgctggtcggaaacatcaacgaaaagaccgag
cgtttcggccatgtgaatatgccggtctttggcgccggcaaggacattcctgcgcgcaca
tggcaatcggtctaccgccagctgctcgccatggggctgatccgtatcgatcatgaggcc
tatggggcgctgaagctggagccggaggcgcgcgccgtcttcaagtctgaacggcaggtt
ttcttccgcaaggacaggccggcctcggaaccgcgcacgaagaaggccgagcgcagtgag
cgcaaatcggccctgtcgggcgctgacggcagcctgttcgaggcgttgcgggccgagcgc
atggcgatcgccaaatcgctcggcgtgccgccctatgttgtctttcccgacacgacgctg
attgcattcgcgacggaacggccgcgaagccgcaaggaactgctcggcatttctggagtc
ggacaggcaaagctcgaccgctatggtgacgctttcctggagatcattctctcgcacgac
aaggattga
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