Rhizobium etli CFN 42: RHE_CH03152
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Entry
RHE_CH03152 CDS
T00317
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHE_CH03152 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ret03019
]
RHE_CH03152 (rhlE2)
Enzymes [BR:
ret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHE_CH03152 (rhlE2)
Messenger RNA biogenesis [BR:
ret03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHE_CH03152 (rhlE2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABC91918
UniProt:
Q2K5G8
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All DBs
Position
3306142..3307824
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AA seq
560 aa
AA seq
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MKPDRMVRSGASRCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEG
RDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFI
RKSPLRINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEAD
QMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADK
VEQYVHFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTAR
AGRDGIAIAFCAPDEAKLLRDIERLMGIDITVASGEPPAHISAGGPRRGNGNGNNRNRGG
GQGRGEGRGDQNRSEHRGSRPERRPRPERPGRNEDFRGQRRGEAAADFGPDNDLASTSDF
RPAKPQRPAHNGPNGHHANGEPSGHHRGNGRHAHGRPARKHGEDRGPHQAQGGEQRRDGN
GGNRRGGSGSRNGGQRRERA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggatcgcatggtgcgttccggcgctagtcgttgtggcgccccgaaaggttat
accttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccag
ctcggcatcgaaacgccgacgccgatccaggaacaggccatccctctcctgctcgaaggc
cgcgatctgatcggccttgcccagaccggcaccggcaagaccgccgccttcggcctgccg
ctcatcgaaaagctgctcgccgacgagcgccgccccgacaaccgtacgacgcggacactg
atcctggcgccgactcgcgagctggtgaaccagatcgccgagaacctgaagaagttcatc
cgcaagtcgccgctgcgcatcaacgtcgttgtcggcggtgtgtcgatcaacaaacagcag
ctgcagctcgaaaagggtaccgatatcctcgtcgccacgcccggccgcctgctcgacctc
gtcaaccgccgcgccatcacgctgacgacggtgcgttatctcgtgctcgacgaggccgat
cagatgctcgacctcggcttcgtgcacgacctgcgcaagatcgccaagctggtgccgaag
aagcgccagaccatgctgttttcggccaccatgccgaaggcgatcgccgatctcgccggc
gaatatctcgtcgatcccgttaaggtcgaagtcacgccgcccggcaaggctgccgacaag
gtcgagcagtatgtccatttcgtcggcggcaagaacgacaagacggaactgcttcgtaag
tcgctgaccgaaaaccccgacggccgcgccatcgtcttcctgcgcaccaagcatggcgcg
gagaagctgatgaagcatctcgacaatatcggctattccgtcgcctcgatccacggcaac
aagagccagggccagcgcgagcgggcgctgaaggccttccgcgacggcagcatcaagaca
ctgatcgccaccgacgtcgccgcccgtggcatcgacatccccgccgtcagccacgtctac
aactacgacctgcccgaggtgccggacgcctatgtccatcgcatcggccgcacggcgcgc
gccggccgcgacggcatcgccatcgccttctgcgctcctgacgaagccaagctgctgcgt
gatatcgagcgcctgatgggcatcgacatcacggtcgcaagcggcgaaccgccggcacat
atcagcgccggcggcccgcgccgcggcaacggcaatggcaataaccgcaatcgcggtggc
ggccagggacggggcgaaggccgtggcgatcagaatcgctcggagcatcgcggcagccgc
ccggaacgccgcccgcgtcccgaacggccaggccgcaacgaggacttccgcggtcagcgc
cgcggcgaagcagccgcggatttcggccccgacaacgatctggcctcgacctccgatttc
cgcccggcaaagccgcagcgccctgcgcataacggccccaatggccatcatgccaatggc
gaaccgagcggccatcaccgcggcaacggccgccacgctcacggccgcccggcccgcaag
cacggcgaagaccgcggaccgcatcaggctcagggcggcgaacagcgccgcgacggcaat
ggcggcaaccgccgcggcggctcgggctcccgcaacggtggccagcgccgcgaacgcgcc
tga
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