Rhizobium etli CFN 42: RHE_CH03955
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Entry
RHE_CH03955 CDS
T00317
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase protein
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
ret
Rhizobium etli CFN 42
Pathway
ret00300
Lysine biosynthesis
ret00470
D-Amino acid metabolism
ret01100
Metabolic pathways
ret01110
Biosynthesis of secondary metabolites
ret01120
Microbial metabolism in diverse environments
ret01230
Biosynthesis of amino acids
Module
ret_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RHE_CH03955 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RHE_CH03955 (dapF)
Enzymes [BR:
ret01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RHE_CH03955 (dapF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
ABC92700
UniProt:
Q2K386
LinkDB
All DBs
Position
complement(4182624..4183529)
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AA seq
301 aa
AA seq
DB search
MSATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTD
AFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAIEHEDGTISVDMG
KPVFDWDRIPLAEEFHDTSRIELQIGPIDNPLLHSPSAMSMGNPHAIFWVDKDVMSYDLA
RFGPLLENHPMFPERANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAAVSAARTGR
TGRKVKINVASAKPPAMLSIEWRERDDHVIMTGPAEWEWSGRLDPATGCWSRDDAREVEA
Q
NT seq
906 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaacggtcgaattcgcgaggatgaacgggcttggcaacaagatcctggtcgtc
gacatgcgcggtcggtccgacaaggtgacgccggcggcggcggtcgcgctcaatgccgat
ccgcagacggagttcgaccagatcatggcgatccatgatccgaaggcggacggcaccgat
gctttcatcgacattttgaattccgacggctcgaaggcgcaggcctgcggcaacggtacg
cgctgcgtcgtgcaggcgctcgccgccgagaccgggcgaaaggccttcaccttccagacg
gtcgccgggatcctcaatgccatcgagcacgaggacgggacgatctccgtcgatatgggc
aagccggtcttcgattgggacagaatcccgctcgcggaagaattccatgacaccagccgc
atcgagctgcagatcggcccgatcgacaatccgctgctgcattcgccgtcggccatgtcg
atgggcaatccgcatgcgatcttctgggtggacaaggacgtgatgtcctatgatctcgcc
cgcttcgggccgctgctggaaaaccatccgatgtttcccgagcgcgccaatatcacgctg
gcgcaggtgacctcgccgacaacgatgacaacgcgcacttgggagcgcggcgccggcctg
acgcttgcctgcggttcggccgcctgttctgccgccgtcagcgccgcgcgcaccggccgc
accggccgcaaggtaaagatcaatgtggcaagcgccaagccgccggccatgctttcgatc
gagtggcgcgagcgcgacgaccacgtcatcatgaccggcccggccgaatgggagtggtcg
ggcaggctcgatcctgcgaccggttgctggtcgcgagatgatgcccgagaggtcgaggcg
cagtga
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