Rhizobium etli CFN 42: RHE_PA00168
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Entry
RHE_PA00168 CDS
T00317
Symbol
cinRa
Name
(GenBank) autoinducer transcriptional regulator protein
KO
K20253
LuxR family transcriptional regulator, quorum-sensing system regulator BisR
Organism
ret
Rhizobium etli CFN 42
Pathway
ret02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RHE_PA00168 (cinRa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ret03000
]
RHE_PA00168 (cinRa)
Transcription factors [BR:
ret03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
RHE_PA00168 (cinRa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autoind_bind
GerE
HTH_10
Gemini_AL1_M
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ABC93030
UNAM_a:
RE1PA0000168
RhizoBase:
RHE_PA00168
UniProt:
Q2K2Q3
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Position
p42a:complement(179066..179851)
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AA seq
261 aa
AA seq
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MVANPQTIITVTERSMQENEHSTTYPDAFSAMKNAATVAAALDEFQSHYPIDFVTFHLAR
TIVDNVDAPFVRTTYPDSWVSRYLLNDYINVDPIIREGFSRQLPFDWREIDITETAQEFM
VDAELHGIGTNGVSVPIVDKSRRSLLSINSQKSDEEWTLIERQFLPEWLELGFLLHRKAV
FELHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTL
SAAIAHAVHLNLITPHVGTPS
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggtcgctaacccgcaaacgataatcactgttacggaaagaagcatgcaggaaaatgag
cattcgaccacctatcccgacgctttcagcgcgatgaaaaatgcggcgacagtggcggcc
gctttggatgaattccaatcgcactatcccattgatttcgtcacgtttcatcttgcgaga
acaatcgtcgataacgttgacgctccgtttgtacgaacgacctatcccgatagctgggtt
tcacgctatttgctcaacgattacataaacgtcgatccaatcattcgggagggcttttct
cgacagttgcctttcgattggcgcgagatcgatattaccgagactgcgcaagagttcatg
gtcgatgccgagctgcatgggatcggcaccaacggagtctctgtcccgattgtcgacaaa
tcgaggcgttcgctcctctcgatcaactcccagaagagtgatgaagaatggacgttgatc
gagcgccagtttttgccagagtggcttgagcttggatttcttctgcatcgcaaagcagtg
ttcgaactccacggtgagaatgatcccgtacctgcgctcggatcacgggaaatcgagtgc
cttcattgggcctcgcgcggcaaagatagcaaggacattggcaagatcctgggactatcc
gagcatacaacacgcggctacctcaaatcagcacgctataagctcggttgccccacgctg
tcggccgcaatagctcatgcagtacacctgaacctcatcacgcctcacgtgggtacccca
agttag
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