Rhizobium etli CFN 42: RHE_PE00209
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Entry
RHE_PE00209 CDS
T00317
Name
(GenBank) probable DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ret
Rhizobium etli CFN 42
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ret03032
]
RHE_PE00209
03400 DNA repair and recombination proteins [BR:
ret03400
]
RHE_PE00209
Enzymes [BR:
ret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RHE_PE00209
DNA replication proteins [BR:
ret03032
]
Prokaryotic type
DNA Topoisomerases
RHE_PE00209
DNA repair and recombination proteins [BR:
ret03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RHE_PE00209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
ACT
Motif
Other DBs
NCBI-ProteinID:
ABC93644
UNAM_e:
RE1PE0000209
UniProt:
Q2K0K0
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All DBs
Position
p42e:244962..245990
Genome browser
AA seq
342 aa
AA seq
DB search
MNAETITELGLIYVSDTEPGIRRRRKGKGFSYVMPDGTTLSDESQRARIGALGLPPAYEN
VWICLYENGHLQATGIDARGRKQYRYHKDWQSFRSAGKFYQLIEFGQALPKIRRTVLRHL
DTGAEDVNGVLAALTTLLDEAHLRVGNQAYVRENGTYGATTLLKRHLKIVDGRIELKFRA
KGGKRVQRSLKHPRLQKILEEISDLPGRQLFVWKDDSGALKPVDSGRLNAYLAEISGVPI
SAKTFRTWAGSLAAFGLARERIVGGGRPTVKEMSEAAAEALHNTPAISRSSYIHPAIIAL
AGNDHPLIEGGSEPLRGLRAEENRLLDFLIRETELNSSAPGV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgaaacaattaccgaacttggcctgatctatgtcagcgataccgaaccgggc
atccgcaggcgaaggaaaggcaagggcttcagctatgtgatgcctgacggtacaacgctt
tccgatgaatcacagcgggcgcgcatcggcgcgctcggacttccgccagcctacgagaat
gtctggatctgtctctacgagaacggtcatctgcaggcgaccggcatagacgcgcgcggg
cgaaaacaataccgctatcacaaggactggcaatcgttccgcagcgccgggaagttctac
cagcttatcgaattcggtcaggcactgcccaagatccgccgcaccgtcctgcggcatctc
gacaccggtgccgaggatgtcaacggcgtgctggcggctctgacgacactgctcgacgag
gcgcatctgcgggtcggcaatcaggcctatgttagggagaacggcacctatggcgcaacg
accctgctgaagcgacatctgaaaatcgtcgacgggcggatcgagctcaaattccgggcc
aagggcggcaagcgcgtgcagcgcagcctcaagcatccgaggctacagaaaatcctggaa
gaaatttccgaccttcccggccgccagctcttcgtctggaaggatgacagcggcgcgctg
aaaccggtcgattctggccggctgaatgcctatctggccgaaatatcgggggttccgatt
tccgccaagaccttccgcacttgggctggatcgctggcggccttcggtctggcccgcgaa
aggatcgtcggcggcggccggccgacggtgaaggaaatgtcggaggctgcggccgaggcg
ctgcacaatacgccggcgatctcacgctcgagctatatccatccggcaatcatcgcgctc
gccggcaatgatcatcctttgatcgagggcggcagcgagccgctgcggggcctgcgggct
gaagaaaacaggctgcttgatttcctcatacgcgagaccgaactgaactcttcagctccc
ggcgtctag
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