Rhizobium etli CFN 42: RHE_PF00239
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Entry
RHE_PF00239 CDS
T00317
Symbol
dppAf
Name
(GenBank) dipeptide ABC transporter, substrate-binding protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
ret
Rhizobium etli CFN 42
Pathway
ret02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ret00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RHE_PF00239 (dppAf)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ret02000
]
RHE_PF00239 (dppAf)
Transporters [BR:
ret02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
RHE_PF00239 (dppAf)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
IL17R_fnIII_D1
Motif
Other DBs
NCBI-ProteinID:
ABC94129
UNAM_f:
RE1PF0000239
RhizoBase:
RHE_PF00239
UniProt:
Q2JZ57
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All DBs
Position
p42f:254262..255848
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AA seq
528 aa
AA seq
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MLKQLLTTIAVTGALMAAQPSLAASPPNMLVIGTNLTGIRTLDPAQNNARTVSELISNLY
DNLVQLSPDDLKTLKPMLATQWSVSDDGKIITLTLRDDAVFQSGNKVTAEDAAWSIQRVI
KMGQVGSTDVALWGFTADNVEKLVRAKDEHTLEIELPQAVNTDLVLYSLAGSSIGIVDKK
TVLSHEANGDFGGAWLSANSAGSGPFSLAQWRPNDVAIFNAQPKYWGGKPAMARVVARHI
PESGNLRLQLEAGDVDVGQYVASGDLDALSSNKDMVIENVPGLGFYYIALNQKDPDLQKP
KVREAFQHAFDWKAISGNIMRYTGFPWQSMIPRGMIGAPEAADVRYNYDPAKAKQLLVEA
GYPNGLKKVLNPSGAPTLPFAEALQASARAAGFDLDLVPGEFTPAFRERKFEVLLGNSGA
RLPDPFAVATQYAFNPDNSDEARLGSYYLWRTGMKVDELNTLIDQSMKERDTGKRTDIFK
KMDGIYAGMASPLVIFFQRTDPYVMRANVKGYHGHTTWSTRWHDVTKE
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaacagctattgacgacaatcgcagttaccggcgccctgatggccgcgcagccg
agcctggcggcatcgccgcccaatatgctggtgattggaacgaatctgaccggcatccgc
acgctcgatccggcccagaacaatgcccgcacggtctccgagctgatctcgaacctctac
gacaacctcgtgcaactgtccccggacgatttgaagacgctgaagccgatgctggcgacg
caatggagcgtatcggacgacggcaagatcatcacgctgaccctgcgcgacgatgcggtc
ttccagagcggcaacaaggtgaccgccgaggatgcggcctggtcgatccagcgcgtcatc
aagatgggtcaggtcggctccacggacgtcgcgctctggggcttcacggccgataatgtc
gaaaagctggtccgcgccaaggacgaacacacgctggagatcgagctgccgcaggcggtg
aataccgaccttgtgctctattcgctggcaggctcctcgatcggcattgtcgacaaaaag
acggtgctgtcgcatgaggcgaacggcgatttcggcggcgcctggctctcggccaattcc
gccggcagcggtccgttcagcctggcgcaatggcgtccgaacgacgtggcgatcttcaat
gcccagccaaaatattggggcggcaagccggccatggcgcgtgtcgtcgcccgccacatc
ccggaatccggcaatctccggcttcagctggaggccggcgacgtcgatgtcggccagtac
gtggcgagcggcgatctcgatgccctctccagcaacaaggatatggtcatcgagaacgtt
ccgggtcttggcttctattatatcgccctcaaccagaaagatcccgacctgcagaagccg
aaggttcgcgaggccttccagcatgccttcgactggaaggcgatctccggcaacatcatg
cgctacactggttttccctggcagtcgatgatcccgcgcgggatgatcggcgctcccgaa
gcggctgatgttcgctataactacgatcccgccaaggcgaagcagctgctggtggaggcc
ggctatcccaatggcctgaagaaagtgctcaatccctcgggagcaccaaccttgcccttc
gcggaagcgctgcaggcgagcgcacgggccgccggcttcgatctcgatctcgtgcccggc
gaattcacgcccgccttccgcgagcgcaaattcgaagtgctgctcggcaattccggcgcc
cgcctgcccgatcctttcgccgtcgccacgcaatatgccttcaatcccgacaatagcgac
gaggcacgcctcggcagctattatctctggcgtaccggcatgaaggtggacgagctcaac
acgctcatcgatcaatcgatgaaggagcgcgacacgggcaaacgcaccgatatcttcaag
aagatggacggcatctatgccggcatggcttccccgctcgtcatcttcttccagcgaacc
gacccctatgtcatgcgcgccaacgtgaagggctatcacgggcacacgacctggtcgacg
cgctggcatgatgtgaccaaggagtag
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