Candidatus Reidiella endopervernicosa: HUE57_02840
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Entry
HUE57_02840 CDS
T06650
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rev
Candidatus Reidiella endopervernicosa
Pathway
rev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE57_02840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rev03019
]
HUE57_02840
Enzymes [BR:
rev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUE57_02840
Messenger RNA biogenesis [BR:
rev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUE57_02840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
HI1480
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QKQ25342
UniProt:
A0A6N0HSL4
LinkDB
All DBs
Position
complement(514533..515849)
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AA seq
438 aa
AA seq
DB search
MSFDSLGLSAEIVRAVTENGYTEATPVQKQAIPIILAGKDIMAGAQTGTGKTAGFTLPML
QRLTEEAQGKGQRPVRALVLTPTRELAAQVHESVVTYGKHLPLRSAVIFGGVKINPQIEK
LRRGVDILVATPGRLLDHAGQRTVDLSKVDILILDEADRMLDMGFIHDIRKVFALLPKDR
QTLLFSATFSSEIKRLADGILRKPELIEVARRNTASELVEQVVHPVDRERKRELLSQLVG
EGNWQQVLVFTRTKHGANRLSQQLERDGITSAAIHGNKSQGARTRALANFKSGEVRVLVA
TDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAMSLVCVDELKLLRDIE
RLIKRELPKVVIDGYEPDPTIKAEPIMKRRGQNQNQGRRGQGRGAGGGGNRPANRSGQKR
GGGGGRGRGRGNQASRSS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatagtctcggtctctcggccgaaatcgttcgtgcggtcaccgaaaatggt
tacaccgaagcaacgcctgtgcagaagcaggccatccccattattctcgctggcaaagat
attatggctggcgcacagaccggcaccggcaagaccgccggtttcaccctgccgatgctg
caacgcctcaccgaagaggcgcagggcaaggggcagcgcccggtgcgtgcgctggtactc
acacccacccgagagctggccgcacaggtccacgaaagtgtggtgacctacggtaaacac
ctgccactgaggagtgccgttatctttggtggggtgaagatcaacccacagatcgagaag
ctgcgtcgtggtgtcgatatcctcgtggcaacaccggggcgtctgctcgaccatgccggt
cagcgtaccgttgacctctccaaggtcgatatcctgatcctggatgaggcggatcgcatg
ctcgacatgggcttcattcacgatatccgcaaggttttcgccctgctacctaaggaccgc
cagaccctgctcttctcggcaaccttctcctccgagatcaaacgcctcgccgacggcatc
ctgcgcaaacccgagctgatcgaggtggcgcgtcgtaacaccgcctcggaactggtcgag
caggtcgtgcatccggtcgatcgtgagcgtaagcgcgagctgctctcgcagctggttggc
gagggtaactggcagcaggtgctggtcttcacccgcaccaaacacggtgccaaccgcctc
tcccagcagctcgagcgtgatggcatcacctccgccgcgatccacggcaacaagagccag
ggcgcgcgtacccgtgcactggccaacttcaagagtggtgaggttcgtgtgctggtagca
accgatattgccgcacgcgggctcgatatcgaccagctcccccacgtggtcaacttcgaa
ctgcccaacgtgccggaggactacgtgcaccgcatcggtcgtaccggccgtgccggtaat
gagggcgaggcgatgtcactggtctgcgtcgatgagctaaaactgctgcgtgatattgag
cgtctgatcaaacgtgagctgccgaaggtggtgatcgacggttatgaacccgatccgacc
atcaaggcagaaccgatcatgaagcgccgtgggcagaaccagaatcaggggcgtcgtgga
caggggcgtggtgcgggcggcggtggcaatcgccctgccaaccgttccggtcagaaacgc
ggtggcggcggtggtcgtggacgcggtcgtggcaatcaggcgtcacggtcaagttga
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