Rickettsia endosymbiont of Cimex lectularius: LF884_00730
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Entry
LF884_00730 CDS
T10696
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rex Rickettsia endosymbiont of Cimex lectularius
Pathway
rex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LF884_00730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rex03021
]
LF884_00730 (rpoC)
03400 DNA repair and recombination proteins [BR:
rex03400
]
LF884_00730 (rpoC)
Enzymes [BR:
rex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LF884_00730 (rpoC)
Transcription machinery [BR:
rex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LF884_00730 (rpoC)
DNA repair and recombination proteins [BR:
rex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LF884_00730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
RnfC_N
YqfD
DUF444
Motif
Other DBs
NCBI-ProteinID:
UCM93371
LinkDB
All DBs
Position
158573..162706
Genome browser
AA seq
1377 aa
AA seq
DB search
MTNFYGQLSSTQQFGQIRINIASPDQVRSWSFGEVMKPETINYRTFKPEKEGLFCARIFG
PVKDYECLCGKYKRMKYRGITCEKCGVEVTTSRVRRERMGHIELAAPVAHIWFLKSLPSR
ISTLLDMTMKDLEKVLYFESYVVVDPGLSALQKGDLLSEDGLQKAQDEYGEDSFTASIGA
EVIQQMLTELDLPELKKSLQEDLLNTSSEVKKKKIVKRLKLVEDFLESENKPEWMIMTVL
PVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKRLLELKAPDIIIRNEKRMLQES
VDALFDNGRRGKVVKNTNKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK
LHQCGLPKTMALELFKPFIYSKLELYGIATTIKAAKKMVEAEKSEVWDILEEVIREHPVL
LNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEARV
LMMSTNNILSPANGRPIIVPDKDIVLGLYYLTMVFDNEPGEGMSFASMSEIEHALYNKVI
TIHSKIKFRRDVLNVEGEVVSTIVDTSFGRLIIGELLPRNHNVGFKFVNKSMTKKDISAV
IDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPKSKDSHINSTLTEVKEF
EQQYSDGLITYGEKYNKVIDAWSKCTDKVANDMMKEIAMTPVNNKPNHQKVNSIYMMATS
GARGSAAQIKQLAGMRGLMAKPSSEIIETPIISNFREGLTVLEYFNSTHGARKGLADTAL
KTANSGYLTRRLVDVAQDCIITDEDCKTTKGIEVRSIIDGGEVIVSLAEQILGRTVAINV
YHPVTNALLLSAGELINEAKLEEIESSGLDVVMVRSVLTCEVVDGICVRCYGRDLATGSL
VSVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATKGVEISSIEASHDAKVKILGRNVVVD
SEGRKIVMGRSCELLLLDANNNERARHKVPYGARLIADDSDKVKKGQKLVERDPYTIPII
TEKSGKVVFKDMVEGVSIRDITDETTGISSKVIIESKQYSRGAELRPRIQLVDENGETIM
LSNGLEARYYMPVNAILNVEDGAKVSVGDILSRIPRESTKTKDITGGLPRVAELVEARRP
KDHAVIAEVDGRVEFGKDYKSKRRIVIQPSDNTTPIEYMVPKGKHVVVNEGDFVKKGDML
IDGNPVLQDILKVMGVEALTSYMVGEIQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTHSG
DTTLMVDEKIDHREFAEINTKAIDNGLRPAEAQPILQGITKASLQTRSFISAASFQETTR
VLTESAIAGKIDKLRGLKENVIVGRLVPAGTGFYMNRMRKLAAKLDQEEVNYQKTLG
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatttttacggacaattaagcagtactcagcaatttggtcaaataagaattaat
attgctagtcctgatcaagtgcgttcatggtcttttggtgaggtaatgaaacctgagaca
ataaattaccgtactttcaagccagagaaagaaggactattttgtgctagaatttttgga
cccgtgaaggactatgagtgtctttgtggtaaatataaacgtatgaaatatcgtggcatc
acttgtgagaaatgtggtgttgaagttactacatctagagtccgaagagaaagaatgggg
catattgagctagcagcaccagttgcccatatatggttcttgaaatctttaccatcaagg
attagtacattgctagatatgactatgaaggatctagaaaaagttctatattttgaaagt
tatgttgttgttgatcctgggttatctgctctgcaaaaaggtgaccttttatcggaagac
ggtttgcaaaaggcacaagatgagtacggggaagatagttttactgcttctattggggct
gaagtaattcagcagatgcttacagaacttgatttacctgaattaaagaagagtttgcaa
gaagatttattaaatacatcttcagaagttaaaaagaagaagattgttaaaagacttaag
ttagttgaagattttcttgaatctgagaataagccagaatggatgattatgactgttctg
ccagttatcccacctgaaattagaccattagttatgcttgatggaggaaggtttgcaact
tctgatcttaacgaactttatagaagggttattaatagaaataatagattaaaaagacta
cttgaactaaaagcaccggatattatcatcagaaatgaaaaaaggatgttacaagaatcg
gtcgatgcattatttgataatggtcgtcgtggtaaagtagtgaaaaatactaataaacgt
ccatttaagtcacttagtgatatgctaaaaggtaaacaaggtcgttttcgtcagaatttg
cttggtaaacgagtggattattctggtcgttctgttatcgttgtgggaccagagcttaag
ttacaccaatgtggtttaccaaagacgatggcgttggaattattcaagccatttatttat
tcaaagcttgaattatatggaattgctaccactataaaagccgctaagaaaatggttgaa
gctgagaaatcagaagtatgggatattttagaagaagttatacgtgaacatccagtattg
ctgaatagagcaccaactttgcatcgtttaggtatccaagcttttgaacctttactgata
gaagggaaagctatccagctacatcctttagtctgtgctgcgttcaatgctgattttgat
ggtgatcagatggcagtgcatatccctctttcaattgaagctcagcttgaggcaagagta
cttatgatgtcaacaaacaacatattgagtccggcaaatggtcgtccgattatcgtccct
gataaggacatagtactaggtctttattatttaacaatggtttttgacaatgaacctggt
gaagggatgagttttgctagcatgtcggagattgaacatgctttgtataataaggtaata
actattcactcaaagataaaatttcgtcgcgatgtgcttaatgttgaaggggaggttgtc
tcaactatagtggatactagctttggtaggttaattataggagaattattaccacgtaat
cataatgttggatttaagttcgtaaataaatccatgactaaaaaggatatatctgcggtt
attgatttggtgtatcgccactgtggacaaaaggctacagtgatctttgctgatcaacta
atgaaacttggatttaaatatgcttgttcctcaggcatttcttttggtatggacgacatg
gttgtaccaaaatcaaaagatagtcatattaattcaacattgactgaggtaaaagagttt
gaacaacaatattctgatggtctaattacttacggtgaaaaatacaataaagtgattgat
gcttggtctaaatgtacggataaagtagcaaatgacatgatgaaagaaattgctatgaca
cctgttaataataagcctaatcatcagaaagtaaattcgatatatatgatggctacttcg
ggagcaaggggatcagcagcacagattaagcaattagctggtatgcgtggtttgatggct
aaaccatcaagtgagattattgaaaccccgattatttctaatttccgagaaggtcttact
gttcttgaatattttaattctacacatggtgcacgtaaaggtcttgcagatacagccttg
aaaacagctaattctgggtatttaacccgtagattagttgatgttgctcaagattgtata
attactgatgaagattgtaaaactacaaaaggcatagaagttagaagtattatcgatggt
ggtgaagttattgtatcgctcgcagagcaaattttaggtagaacagttgcgattaacgta
tatcacccagttactaatgcattattactatcagccggtgaattaattaatgaagcaaaa
ttagaagaaatcgaatcttctggtttggatgtggtaatggtaagatctgttctaacatgt
gaggttgttgatggaatatgtgtaagatgttatggtagagatctagccactggttcttta
gtatcagtcggagaagcagtaggagtgattgctgcccagtcaattggtgagccaggtacc
cagctgactatgagaactttccatattggaggagctgcaacgaaaggtgttgaaatatct
tcaatagaagcctctcatgatgcaaaagtgaagattttaggtcgtaatgtggttgttgat
tctgagggacgtaagatcgtaatgggtcgttcatgtgagttattattattggatgctaat
aataatgagagggcaagacataaagtaccgtatggtgcaagattaatagccgatgattca
gataaggtaaaaaaaggacaaaaattagtagagagggatccgtacactattccgattatt
accgagaaatctggaaaggttgtatttaaggatatggtagaaggagtgtcaattcgtgat
atcactgatgaaacaactggtatttctagcaaagttataattgaatcaaaacaatattca
cgcggagcagagttacgtcctcgtattcaattagttgatgagaatggagaaactattatg
ctgtccaatggtttggaggctagatattacatgccagtgaatgctattttaaatgttgaa
gatggtgctaaggtgtcagtaggtgatattttatcacgtattccaagggaatcaactaaa
acaaaagatattactgggggtcttccacgagtagctgaacttgttgaggctagacgtcca
aaagatcatgctgttattgcagaagtagatggtagagttgaatttggcaaagactataag
tcaaaaaggcgtattgttattcagccaagtgataacactacaccaattgaatatatggta
ccaaaaggcaaacatgttgttgttaatgaaggtgattttgttaaaaaaggcgatatgtta
attgatggcaatccagttctacaggatattttaaaggtaatgggagtggaagctcttaca
agctacatggtgggagaaatccaagcagtttaccgtttacagggcgtaaaaattgacgat
aagcacattgaggtaataattcgccaaatgttacaaaaagtagaggtaacccattctggg
gatacgacattaatggttgatgagaagatagatcatcgtgaatttgctgaaattaataca
aaagctatagataacggtttaagaccggctgaagcccaaccaatcctacaaggtattact
aaggcatcgttgcaaactagatcatttatttctgcggcttctttccaagaaacaacaaga
gttctaacggagtctgctatagctggaaaaattgataaattgcgtgggttgaaagaaaat
gtcatagttggtagattagtaccagcaggaacaggcttttacatgaatagaatgcgtaaa
cttgcagctaaactggaccaggaagaggtcaattatcagaaaactttaggatag
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