Rickettsia endosymbiont of Cimex lectularius: LF884_01725
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Entry
LF884_01725 CDS
T10696
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rex Rickettsia endosymbiont of Cimex lectularius
Pathway
rex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LF884_01725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rex03400
]
LF884_01725 (mfd)
Enzymes [BR:
rex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF884_01725 (mfd)
DNA repair and recombination proteins [BR:
rex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LF884_01725 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
HVO_0513_N
Motif
Other DBs
NCBI-ProteinID:
UCM93022
LinkDB
All DBs
Position
380407..383787
Genome browser
AA seq
1126 aa
AA seq
DB search
MIQQPLPLSAKSFFANEYFSNKPTKNILLIFASEDDAINSHKQLLFFAQSIKTSNILYFP
SFDTIPYDRISPQSNILSERANTLSYLATNNEKKLVVTNAVNLLSKLPPSEFLVKSFLKL
HNKMKFSAGKLAEFLVHNGFTRSSSSIDSGEFSVRGEIVDIILPGYKGYRINFSWDHIES
IREFDIDSQISTNSCTELIINSASEVILNLETIKNFRDNYLKAFGVNYVNSPLYESITEG
KKFQGYEHLSPLFYNSFSSLINYLDDPIIIYDNLSLQSILEQENNYTDLYKSRIESNKIK
LNTFYPALPPEQIYFTSQEIQTLLEQDKNILITPEDSSYAYSLEKIIATSFIEDKTVFDK
LFEIIENNNTKIPIIFCQSKSNLERLKSLINSYSREYIEIDNLQQAKIGVINLAYVQLSQ
GFYSDRYLFIAAHDILGKSAANVRQQGAKRKLKNILMELDNLGEGELVVHKDHGIGQFLN
VETLDVKGKAHDFLKILYENNDKLYIPVENIELIKKYGSSEAQLAKLGSSSWQRSKAKLK
NRITEIAEQLLAIAAKRKLTVTNPIEFDHEEYDKFCQRFKYTETEDQLNAINDIRKDFDS
GLLMDRLICGDVGFGKTEVAIRATFMVAKSNCDVPPQVAIVVPTTILGKQHYLRFRKRFK
DLGLNIVQLSSLVTNSEAKMVKEQIKNGTANIIIGTHVLLSKNIEFSNLRLLIIDEEQHF
GVAQKEHLKKLRTTMHVLSLSATPIPRTMQMSMVGLKDLSIIATPPIDRLEVRTTVMPFD
PVIIRDALLRERFRGGRSFYVVPRIKDIPDIERYLQEGVPELKYKVAHGQMPAAKVDEIM
SEFCDGKFDILVSTTIIESGIDIAEANTMIIHKSDMLGLSQLYQLRGRIGRSKVRGYAYL
TLANYKKMTAHSIKRLEIMQSSCTLGSGFTIASHDMDLRGFGNLVGEEQSGQIKEVGVEL
YQEMLDEQIAILKDEVIEQPKAFVPIINLGLPVFISDNYIADSALKLSLYRRVGNLIDDI
DIENFKDEMVDRFGPIPSEFNNLLNIVKIKHKCSKLNIENLDSGDRGFVLKFYKESDIAD
KIRNFVIKYPQQTKIKPDTKLVFTKTLVGKDIIEEANSLLEQLLAA
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgatacaacaacctctaccactcagtgcaaaaagtttttttgctaatgagtatttctca
aataaaccaaccaagaatattttacttatttttgctagtgaagatgatgcaattaatagc
cataaacagttattattttttgcacaaagcattaagactagtaatatattatattttcct
agttttgatactataccatatgatcgcatttcaccccagtctaacattttatcagaaaga
gctaatacactaagttatttagcaactaataatgaaaaaaaattggtagttactaatgcg
gtgaatttactgagcaaattaccgccttcggaattcctagttaagtcttttctgaaatta
cataataaaatgaagttttcagcgggtaagctcgctgagttcctagtacataatggtttt
acaaggagtagtagtagcattgatagtggcgaattttcagtaagaggagagatagtagat
ataattttaccagggtataagggctatcgtattaattttagttgggatcacatagagtca
ataagagaatttgatattgatagtcaaatttctactaatagctgcacggagctaataatt
aattctgccagtgaggtaatattaaatctagaaacaataaagaattttagagataattat
ctaaaagcttttggtgttaattacgtgaatagccctttatatgaatcaataactgaagga
aaaaaatttcaaggatatgaacatttatctcctttattctataattctttcagtagttta
attaattatttagatgatcctattattatttatgataatttgtcgttacaatcaattctt
gagcaggagaataattatacagatctttacaaatcccgcattgagtctaataaaataaaa
ttaaacacattctatcctgcgttgcctcctgagcagatttactttaccagtcaggaaata
caaactttactagaacaggataagaatattttaattactcctgaagattcatcttatgca
tattcattagaaaaaattattgccactagttttattgaggataagacagtttttgataag
ctatttgagattatagagaacaataatactaaaataccaattattttttgtcagtctaaa
agtaatttggaaagactgaagagcttgataaatagctactcacgagaatatatcgagata
gacaatctacaacaggcaaaaattggtgtgataaatcttgcatatgtccaactgagtcaa
ggattttatagtgatagatatttgtttattgcagctcacgatattttagggaaaagtgcg
gcaaacgttcgccagcaaggtgctaaacgtaagcttaaaaacattctaatggaattagat
aatttaggtgaaggagagttagttgttcataaggatcatggtattggtcaatttcttaat
gttgaaacactagatgttaaaggcaaagctcatgatttcctaaaaattttatatgagaat
aatgataaattatatattcctgttgagaatatagagttaattaagaaatatggtagtagt
gaagcacagctggccaagttaggtagcagtagctggcaaagaagtaaggctaagctcaag
aatcgtattacagaaattgccgaacaattattagcaatagctgctaagaggaaattaact
gtaactaatccaatagagtttgatcatgaagaatatgacaaattctgtcagagatttaaa
tataccgaaactgaagatcaattaaatgccataaatgatattagaaaagattttgactca
ggtcttttaatggatagattaatttgtggtgatgttggttttggaaaaactgaagtggcc
ataagggcaacttttatggtagctaaatcaaactgtgacgtcccccctcaagtagccatt
gtcgtaccaactactattctaggtaagcagcattatttaagatttcgcaaaagatttaag
gatttagggctgaatatagtacaattatctagtctagttaccaatagcgaggctaaaatg
gttaaagaacaaatcaaaaatggtacagctaatataataattggtacacatgtcttgctg
agtaagaatatagaatttagtaacctaagattattaataattgatgaagaacaacatttt
ggtgttgctcaaaaggaacatttaaagaaactaagaactacaatgcatgttctatctctt
tcggcgaccccaattcctcgtacaatgcagatgtctatggtagggctgaaagaccttagt
atcattgccacaccaccgattgataggctagaagttcggacaacagttatgccgtttgat
ccggtgattattagagatgctttacttagagaacgtttccgtggtggtagaagtttctat
gtagtgcctagaattaaggacatcccggatatagagagatacttacaggaaggtgtacct
gaactaaagtacaaagttgctcatggccaaatgccagctgccaaagtagatgagattatg
agtgaattttgtgatggtaagtttgacatactcgtttctaccacaataattgagtcaggt
atagatattgccgaagctaatacaatgattattcataaatctgatatgcttggtttgagt
cagttatatcagctcagaggtaggataggacgaagtaaagtcagaggttatgcctattta
accttagctaattataagaaaatgaccgcacattcaataaaacgtctagaaataatgcag
agtagttgtactcttggttctggttttaccattgccagccatgatatggatttacgtggt
tttggtaacttggtaggagaagagcagtctggacagattaaagaagtaggagtggagctt
tatcaggagatgttagatgaacaaatagcaattcttaaggatgaagttattgagcagcca
aaagcttttgttccaataattaatttgggattacctgttttcatttccgataattatatt
gcagattctgctcttaaactaagtttgtacagaagagttggaaatttaattgatgatata
gatattgaaaattttaaggacgaaatggttgaccgttttggtcctatcccatcagagttt
aataatctacttaatatagtaaaaataaagcataaatgcagtaagcttaatattgaaaat
ttagactctggtgatcgaggatttgttttaaaattttataaagaatcagatatagctgat
aagattagaaattttgttataaaatatcctcagcaaaccaaaataaaaccggatactaag
ttagtatttaccaaaacattggtaggaaaagatattatagaggaagcgaatagtctgttg
gagcaattattggcggcataa
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