Rhodococcus erythropolis CCM2595: O5Y_17520
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Entry
O5Y_17520 CDS
T02806
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rey
Rhodococcus erythropolis CCM2595
Pathway
rey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5Y_17520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rey03019
]
O5Y_17520
03009 Ribosome biogenesis [BR:
rey03009
]
O5Y_17520
Enzymes [BR:
rey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O5Y_17520
Messenger RNA biogenesis [BR:
rey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O5Y_17520
Ribosome biogenesis [BR:
rey03009
]
Prokaryotic type
rRNA processing factors
O5Y_17520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AGT93347
LinkDB
All DBs
Position
complement(3837252..3840500)
Genome browser
AA seq
1082 aa
AA seq
DB search
MADQSPTESDSSTTPEFPDKMRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLQRDVA
QRIHASLTSAAEAIEPVVAELDSLIDPVVEAPVAEAPVAEEPAAEAPAEKPVRARRTRKK
VVVEEPAAEEPSAEEAVDPAVAEISAGLDAAAALQSKEAEQSDLFTSFEAPQTHQPEVVP
AAPQVPLFLQPDLEAAEVAPRRRRARREPAAPAVVEEKQTTTEAETVVPEAAPVAVPAVE
EPAVTAPQTEGESAESEDEDDDQPRRRRRGRRGRGRGRGEQGGEQGSDEESDTAAESEQE
SAPAAVEKQTDDAAGEESGDKSESTADADSENADDSDLDADGSSRRRRRRRRRKTGTDGA
TDATATSEDDPPNTVVHEREPRNKTRVKDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPI
LTESEFLARREAVDRVMVVRDRADSGQPHATTQVAVLEDGVLVEHFVTNSASASMVGNVY
LGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQVS
KDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILRDIVPADAGVI
IRTASEGVSEEELARDVTRLQAQWAGIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLF
NEDFSKLVIEGEKAHTTVENYINSVAPDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDR
KVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIG
GMIVVDFIDMVLESNRDLVLRRLTECLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAF
STTCEHCHGRGIIVHSEPVEVKSSDDGGSRSGSQRSESGTSRKNKRGRGDKSPSTESNGQ
EAPAPEVPAVDATVKRAHPVALAMASHHHDDDETVAAGSIESDSTGTSSGDDASKSADRQ
QDRPIDTPAATERHDVPVVDSAAEEVSAVDNESATASTEAAPRGRRRSRRASRAASAPVA
EAAPEVGTVFVIPTPEPVAEPVVENVPAPATEVPAEEEVVVVKRPRRRRAAARPAGPPVD
GE
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaatccccaaccgaatcagattccagcaccaccccggaatttcccgacaag
atgcgcgtacacgcgctggcgaagctgctcggtgtcaccagcaagcaggtccttgccgaa
gccgcagcgctcggtaccgaattgcgcagtgcgcagtcgagtctccaacgggacgttgcc
cagcggattcacgcctcgctgacttccgcggccgaggccatcgagccggtcgtggccgag
ctcgatagcctcatagacccggttgtcgaggccccggttgccgaggcccctgttgcggaa
gagcctgctgcagaggctccggccgagaagcctgtcagggctcgtcgcacccgcaaaaag
gtcgttgtcgaagaaccggccgccgaagaaccttcagcagaagaagcagtggatccggct
gtcgccgagatcagcgctggactcgacgccgctgctgcgctgcagagcaaggaagccgag
cagtccgatctgttcacttccttcgaggcgccgcagacccatcagcccgaggtggttccc
gccgcgccgcaggtcccgctgttcctgcagccggatctcgaagccgccgaggtagctccg
cgtcgccgtcgcgcacgccgcgagcctgctgcaccggcggtcgtcgaagagaagcagaca
actacggaagccgaaaccgtcgttcccgaggcagcaccggttgcagttcctgccgtcgaa
gagccggctgtgaccgcaccgcaaaccgagggcgagagcgccgagtccgaggacgaggac
gacgatcagccgcgtcgccgtcgtcgtggacgccgtggacgtgggcgtggtcgcggtgaa
cagggtggcgagcagggttcggacgaagagtcggataccgctgccgaatcggagcaggaa
tctgcccctgcggcagtcgagaagcaaaccgacgacgctgccggcgaagaatccggtgat
aagtccgagtccaccgcggatgcggattccgagaatgccgacgattccgatctcgatgcc
gacggatcgagccgccgtcgccgccgtcgtcgtcgtcgcaagaccggcaccgacggcgcc
accgacgcgactgcgacgtccgaggacgatccgccgaacaccgtcgttcacgagcgcgaa
cctcgcaacaagacccgcgtcaaggacgaggtccagggcatcagtggttcgacacgtctg
gaagcgaagcgtcagcgtcgccgcgacggtcgtgacgccggccgtcgtcgcccgccgatt
ctgaccgagtcggagttcctcgcgcgtcgtgaggccgtcgatcgcgtcatggttgtgcgt
gatcgagcagacagcggtcagccgcatgcgactacacaggtagcagtcctcgaagacgga
gtgttggtcgagcacttcgtcaccaactcggcgtccgcgtcgatggtcggcaacgtgtac
ctcggacgtgtccagaacgtgctccccagcatggaagcggcgttcatcgacatcggacgt
ggccgcaacggcgttctctacgccggtgaggtcaactgggaggctgccggtctcggtggc
aactcgcgcaagatcgagcaggccctcaagccgggcgatcaggtgctcgttcaggtcagc
aaggatccggtcggtcacaagggtgctcgactgaccacacagatttcgcttgccggtcgt
ttcctcgtctacgtgcccggtggtacgtccacgggtatcagccgcaagcttccggacacc
gagcgcaagcgtctcaaggaaatcttgcgcgacatcgttcccgccgacgccggcgtgatc
attcgcacggcgtccgagggcgtcagcgaagaagagttggcgcgcgacgtgactcgtctg
caggctcagtgggccggcatcgaggagcaggccgcggctgcggacaccggtaagtccggc
aacccgcaggcgctgtacgaagagcctgacatgctggtaaaggtcattcgtgatctgttc
aacgaggacttctccaagctggtcatcgagggcgagaaggcgcatacgacggtcgagaac
tacatcaactccgttgcgcccgatctgcttccgcgactcgagaagtacacgccgaacaac
ggtatcgacgtcttcgccgctcgccgtatcgacgagcagttggccaaggcactcgatcgc
aaggtgtggctgccgtccggcggcaccttggtgatcgatcgcaccgaggccatgaccgtc
gtcgacgtcaacaccggaaagttcaccggagccggcggaaacctcgaagagaccgttacc
cgcaacaacctcgaagcagccgaggagatcgttcgccagatgcgcctgcgggacatcggc
ggaatgatcgtcgtcgacttcatcgacatggtcctcgaatcgaaccgggacctggtcctg
cgtcggctcaccgaatgcctgggtcgcgatcgcacgcgccatcaggtgtcggaggtcacg
tcactcgggctcgtgcagatgacgcgcaagaagttgggcaccggattggtcgaggccttc
tcgaccacctgtgagcactgccacggccgcggcatcatcgtccactccgagccggtcgag
gtgaagtcctcggacgacgggggatcgcgttcgggctcgcagcgaagcgaatccggcacc
tcgcgcaagaacaagcgaggccgcggagacaagtcgccttcgaccgagtccaacggacag
gaagctccggcgccggaggttccggctgtcgacgcgaccgtcaagcgggctcatccggtg
gcattggcgatggcctcgcaccaccacgacgacgacgagaccgtcgcggccggctcgatc
gagtctgattccaccggtacgtcttcgggggatgatgcatccaaaagtgccgatcggcaa
caggatcggccgatcgatactcctgctgctactgagcgccatgacgttcctgttgtggac
tctgctgcggaagaagtatccgcagtggacaacgagtcggcgacagcttcgaccgaagca
gctccgcgcggtcgtcggcgtagtcgccgggcgtcgcgggcagcgtcggcaccggttgcc
gaggcagctcccgaggtgggtacggtcttcgtgattccgactccggaacccgtggcagaa
ccggtcgtggaaaacgttccggctccggccaccgaagttccggctgaggaagaagttgtc
gtcgtcaagcgaccccgtcgcaggcgtgcagcagcacgtcccgcaggtcctccggtagac
ggagagtaa
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