Rhizobium esperanzae: AMJ99_CH02225
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Entry
AMJ99_CH02225 CDS
T05681
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rez
Rhizobium esperanzae
Pathway
rez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMJ99_CH02225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rez03400
]
AMJ99_CH02225 (mfd)
Enzymes [BR:
rez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMJ99_CH02225 (mfd)
DNA repair and recombination proteins [BR:
rez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMJ99_CH02225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANL03767
LinkDB
All DBs
Position
2194741..2198244
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLEPLLLAELARTGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRVVTDHTVREAAEERSKL
VLDYFDARLNSGQPAKGHMAQGTPYKPVTPGQLYLDSKLFAKTLDALGAIRVSPFNEIEG
EARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADRRAGGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPVEALKDLATLGKGEAAAAVLNLESGFEAGDLVVIGEQDILGDR
MVRRSKRRKRAADFIAEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPVLTTPDGLYDEFSARFPYDETEDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKK
EVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATADRRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPEDYVPDLHLRMALYRRLGELTELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEMAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgcctgccggtctcgaaccgctgctgctcgccgaactcgcccgcacgggagagccg
gtcgcctatgtcatgtccgacggccaccgcatggccgatctcgagcagatgctgggtttt
gtcgcccccgacattccggttctcaccctgccggcttgggactgtttaccctatgaccgc
gtctcgccgagcgccgatacatcggcccgccggcttgccgcactcggcggtctcatcgcc
caccgcaaaaagccgcatgcggctatcgtgctcgtcaccgccaatgccatgctgcagaag
gtggcgccgcaggatgtcattgaaagcctgagcttttcggcccgtcccggaaaccagctg
cgcatggacgatttggccgggcgcctggagcgcaatggcttcgaccgcgttgcgaccgtt
cgcgaggtcggcgaatatgccgtgcgcggcggcattctggacgtcttcgtgccgggttcg
gaagagccggtccgcctcgatttcttcggcgatacgctggaatcgatccgcagtttcgat
ccggccagccagcgcaccaccggccaggtgcgctccctcgatctcaacccgatgagcgag
gtgacgctgacgcccgatacgatcagccgcttccgcaagaattacctctcggccttcggc
gcgacgacgcgcgacgatgcgctctatctcgccgtctccgaaggccgccgttatcccggc
atggagcactggctgccgctcttctacgagaagctcgataccgtcttcgattatctcagc
ggtttccgtgtcgtcaccgaccacacggtgcgtgaggcggcggaggagcgctccaagctc
gtcctcgattatttcgacgcccgcctgaattccggccagccggccaagggccacatggcg
cagggcacgccctacaagccggtgacgccgggccagctctatctcgacagcaagcttttc
gccaaaaccctcgacgcgctcggcgcgatccgcgtcagccccttcaacgagatcgagggc
gaggcgaggcgggtcgtcaatatcgaggcccgccagggccagcgctgggcccgctcgaat
gccgaaggcggcggtgacgccgaacgcgtcaatattttcgacgtcgtcgtcaagcacatc
gccgaccggcgcgccggcggggcgaaggtgctggtaaccgcctggaccgaaggttcgctg
gagcggctgctgcaggtgctgaacgaacatggcctggaaaaggtcaagccggtcgaggcg
ctgaaagatctcgccacgctgggcaaaggcgaggcggccgcggccgtgctcaatctcgaa
tccggcttcgaggccggcgatctcgtcgtcatcggcgagcaggatattctcggcgaccgc
atggtgcgccgctccaaacgccgcaagcgcgccgccgatttcattgccgaggtcgcaggc
ctcgatgaaggctcgatcgtcgtccatgccgaacacggcattggccgcttcatcgggctg
aagaccatcgaggcggcaggcgccccgcatgcctgcctcgagctgcaatatgccgatgag
gccaaactcttcctgccggtcgaaaacatcgacctgctctcgcgctatggcggcgagggc
accgacgcccagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctc
aagaagcggctgctcgatatggcggacgcgctgatccgcatcgccgccgagcgcctgacg
cgccacgcgcctgttctgacgaccccggacgggctttacgacgagttttccgcccgtttc
ccctatgacgagaccgaagaccaggacaatgccatcgaagccgttcgctccgatctcggc
gccggccggccgatggaccgcctcgtctgcggcgacgtcggcttcggcaagacggaggtg
gcgctgcgcgccgccttcgtcgccgcgatgaacggcgtccaggttgccgtcgtcgtgccg
acgaccttgcttgcgcgccagcatttcaagactttttccgagcggttccgtggcctgccg
gtgcgtgtccagcaggcctcccgccttgtcggcgccaaggatctggcgctgaccaagaag
gaagtggccgaaggcaagaccgatatcgtcgtcggcacccatgcgctgctcggcgccggc
atcaaattcgccaatctcggcctgctggtcatcgacgaggagcagcatttcggcgtcaag
cacaaggagcggctgaaggagctgaagagcgacgtgcacgtcctgacgctgtcggcgaca
cccatcccgcgcacgctgcagcttgccatgaccggggtgcgcgaactatcgctgatcacc
acgccgccggtcgaccgcatggcggtgcgcaccttcatctcgccgttcgacagccttgtc
atccgcgagacgctgatgcgcgagcactatcgcggcggccagagcttctatgtctgcccg
aggcttgccgacctcgccgatgtgcatgccttcctgcagtccgacgtgccggagctgaag
gttgccgtcgcccatggccagatgccggccggcgaactggaagacatcatgaacgccttt
tatgaaggccgctacgatgtgctgctgtcgaccaccatcgtcgaatccggcctcgatgtg
ccgacagccaacacgctgatcgtccaccgcgccgatatgttcggccttgcccagctctat
cagctgcgcggccgcgtcggccgctcgaaggtgcgcgccttcgcgctcttcaccctgcct
gtcaacaaggtgctgacggcgacggccgaccgccggctgaaggtgctgcagtcgctggac
acgctcggtgccggcttccagctggcgagccacgatctcgatatccgcggcgccggcaac
ttgctcggcgaggagcagtcgggtcacatcaaggaagtcggcttcgaactctatcagcag
atgctggaagaggcagtcgccgaggtcaagggtgtcgacgagatccacgacaccggctgg
tcgccgcagatctcggtcggaacgacggtgatgatcccggaagactacgtgcccgacctg
catctgcgcatggcactttaccgccgtctcggcgaactcaccgaactcaaggagatcgac
ggcttcggcgccgagatgatcgaccgcttcgggccgatgccgatcgaagtgcagcatctc
ctgaagatcgtctacatcaagtcgctctgccgtaccgccaatgtcgaaaagctcgatgcc
ggcccgaagggcgtggtcgtgcagttccgcaacaaggaattccccaacccggcaaacctc
gtcggctacatcggcaagcagggtacgatggcgaagatccgccccgatcacagcctgttc
ctgactcgcgacctgccgacaccggaaaaacgcctgcagggtgctgccgtgatcatgacg
caactggccgagatggcgaaataa
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