Rhizobium esperanzae: AMJ99_CH03086
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Entry
AMJ99_CH03086 CDS
T05681
Symbol
raiR-1
Name
(GenBank) transcriptional activator protein 1
KO
K20252
LuxR family transcriptional regulator, quorum-sensing system regulator CinR
Organism
rez
Rhizobium esperanzae
Pathway
rez02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rez00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AMJ99_CH03086 (raiR-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rez03000
]
AMJ99_CH03086 (raiR-1)
Transcription factors [BR:
rez03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
AMJ99_CH03086 (raiR-1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autoind_bind
GerE
Sigma70_r4_2
Gemini_AL1_M
Sigma70_r4
HTH_23
HTH_10
Motif
Other DBs
NCBI-ProteinID:
ANL04609
LinkDB
All DBs
Position
3061436..3062167
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AA seq
243 aa
AA seq
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MEMIENTYSDKFEPAFEQIKAATNVDAAIRILQAEYGLDFVTYHLAQTIASKIDSPFVRT
TYPDSWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGY
SIPVADKAQRRALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPT
LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI
INP
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgatcgagaatacctacagcgacaagttcgaacccgctttcgaacagatcaag
gctgcaaccaatgtggatgccgccatccgtattctccaggccgaatatggcctcgatttc
gtgacctaccatctcgcccagacgatcgcgagcaagatcgattcccccttcgtgcgcacc
acctatccggattcctgggtctcccgctacctcttgaacagctatgtgaaggtcgatccg
atcgtcaagcagggtttcgagcgccagctgcccttcgactggagcgaagtcgagccgacg
ccggaagcctatgccatgctggtcgacgcccagaagcacggcatcggcggcaacggctat
tccattcccgtcgccgacaaggcgcagcgccgcgcgctcttgtcgctgaacgcccgcata
ccggccgaggaatgggccgagcttgtgcgccgctgccgcaacgaatggatcgagatcgcc
catctgatccaccgcaaggccgtctatgagctgcatggcgagaatgatccggtgccgaca
ttgtcgccgcgcgagatcgagtgcctgcactggacggcgctcggcaaggactacaaggat
atctcggtgatattgggcatatcggagcacacgacgcgcgattacctgaaaaccgcccgc
tttaagctcggctgcgccacgatttcggccgccgcctcgcgggccgtgcagttgcgcatc
atcaatccctga
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integrated database retrieval system
