Rhodococcoides fascians D188: A3L23_02933
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Entry
A3L23_02933 CDS
T04328
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rfa
Rhodococcoides fascians D188
Pathway
rfa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A3L23_02933 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfa03021
]
A3L23_02933 (rpoC)
03400 DNA repair and recombination proteins [BR:
rfa03400
]
A3L23_02933 (rpoC)
Enzymes [BR:
rfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A3L23_02933 (rpoC)
Transcription machinery [BR:
rfa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A3L23_02933 (rpoC)
DNA repair and recombination proteins [BR:
rfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A3L23_02933 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AMY54266
LinkDB
All DBs
Position
3013972..3017928
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITTVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDELI
YRELIDRYGEYFTGAMGAESIQKLMQTFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQAGRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDAGAVGERV
DASTDQAEFGAYSSPAEAQMAVDRGSLTVQSQIRVRLTTQRPPRDIENELFPEGWNRGDA
WTAETTLGRVLFNELLPADYPFVNEQMPKKRQSTIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISISDVLVPPEKPQIMETFEAQADQIEKKYQRGALDKVERNSALVKIWQDA
TEQVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIVTTI
AEKTADGKMIRDAHVETSTYARTLANDAVDENGTVIVARGHDLGDPAIDALLAAGITSVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIADVSGRIQLEDGDRFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQE
VYRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERSEFESSNRRVVSEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNITVQPTEEARAAAYAVPSYDDQYYSPDGFGQGTGAAVPLDDYGFSNEYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaacttcgcattggccttgccactgcggacgacatc
cgtcagtggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcactcgcgccaaggttcgtcgtgagcgcatgggtcacatcgaactggccgctccg
gtcacgcacatctggtacttcaagggtgtgccgtcgcgtctgggctacctgctcgacctg
gctccgaaggatctcgagaagatcatctacttcgctgcctacgtcatcaccacggtcgac
gacgagctccgtcacaacgagctctcgacgctcgaggccgagatggaggtcgagaagaag
gccgtcgcagatcagcgcgacgccgatctcgaggctcgtgcgcagaagctcgaagccgac
atcgccgagctcgaagccgagggtgccaagtccgacgtgcgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgtgaccgcgcgcagcgtgagctcgatcgtctcgaa
gagatctggaccacgttcaccaagctcgctcccaagcagctcatcgtcgacgagctcatc
taccgcgagctcatcgaccggtacggcgagtacttcaccggtgccatgggtgccgagtcc
atccagaagctcatgcagaccttcgacatcgacgccgaggcggaatctcttcgcgagacc
atccgcagtggcaagggtcagaagaagctgcgcgcgctcaagcgtctgaaggtcgtcgct
gcgttccaggccggccgtaactcgccgatgggcatggttctcgacgctgtcccggtcatc
ccaccggagcttcgtccgatggtgcagctcgacggtggccgtttcgcgacgtccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgtctgatcgatctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggccgtcgtggacgtccggtcaccggaccgggtaaccgcccgctgaag
tcgctctccgacttgctcaagggcaagcagggacgattccgtcagaacctcctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgtggtctgccgaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gtggatctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgt
ccgcaggtgtgggacgttctcgaagaggtcatcgccgagcaccccgtgctgctgaaccgt
gcacccaccctgcaccggttgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcacccgctcgtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggctgtccacctcccgctgtccgccgaggctcaggccgaggcacgcgtgctgatgctg
tcgtcgaacaacatcctctcgccggcatcgggccgtccgctcgccatgccgcgtctggac
atggtgacgggtctgtaccacctgacacgtctcgatgccggtgctgtcggcgagcgcgtc
gacgcatcgaccgatcaggccgagttcggggcgtactcctccccggccgaggctcagatg
gccgtcgatcgtggatcgctgaccgtgcagtcgcagattcgggttcgtctcaccacgcag
cgcccgccgcgtgacatcgagaacgagctgttccccgagggctggaaccgcggcgatgca
tggaccgcggagaccactctgggacgcgtgctcttcaacgagctgcttccggcggactac
ccgttcgtcaacgagcagatgccgaagaagcgtcagtcgaccatcatcaacgatctcgcc
gagcgttacccgatgatcgtcgtcgcacagaccgtcgacaagctcaaggacgcaggcttc
tactgggccacgcgttcgggtgtcaccatctcgatctccgacgtcctcgtgccgccggag
aagccgcagatcatggagaccttcgaggctcaggccgatcagatcgagaagaagtaccag
cgtggcgcactcgacaaggtcgagcgcaactccgcactggtcaagatctggcaggacgcg
accgagcaggtcggtaaggccatggaggcccacttccccgacgacaacccgatcccgatg
atcgtgaagtccggcgcagccggaaacatgactcaggttcgctcgctcgccggcatgaag
ggcttggtgacgaacccgaagggtgagttcatcccgcgtccgatcaagtcttccttcaag
gaaggcctgacggtcctcgagtacttcatcaacacgcacggtgctcgtaagggtctggcc
gacacggcgcttcgtaccgccgactcgggctacctgacgcgtcgtctggtcgacgtctcg
caggatgtcatcgttcgggaaaccgactgtggcaccgagcgcggcatcgtcacgacgatc
gccgagaagaccgccgacggcaagatgatccgcgacgctcacgtcgagaccagcacgtac
gcccgcaccttggcgaacgacgctgtcgacgagaacggcacggtcatcgtcgctcgcgga
cacgatctcggtgacccggccatcgacgcgctgctcgctgcgggcatcacgtcggtcaag
gttcgctcggtgctgacctgcaccaccggaaccggcgtctgcgccacctgctacggccgc
tcgatggccaccggcaagctggtcgacatcggtgaggccgtcggtatcgttgccgcacag
tccatcggtgagcccggaacccagctgaccatgcgtaccttccaccagggtggtgtcgcc
ggagatgacatcaccggcggtctgcctcgcgtgcaggagctgttcgaggcacgtgtgccg
aagggcaaggctccgatcgcggacgtgtcgggacgcattcagctcgaggacggcgatcgt
ttctacaagatcaccatcgtcccggacgacggcggcgaagaggttgtctacgacaagctc
tccaagcgtcagcgtctgcgcgtcttcaagcacgacgacggcaccgagcgcctgttggcg
gacggtgaccacgtcgaggtcggccagcagctcatggaaggtgctgccgatccgcacgag
gtcctgcgcgtgatgggtccccgtcaggtgcagatccacctcgtcaacgaggtccaggag
gtgtaccggtcgcagggtgtgtcgattcacgacaagcacatcgagaccatcgtgcgccag
atgctccgtcgcgtgacgatcatcgacagcggctccaccgaattcctgcccggttcactc
accgagcgcagcgaattcgagtcgagcaaccgtcgcgtcgtctccgagggtggcgagccc
gcagccggacgtccggtcctgatgggtatcaccaaggcgtcgctggccaccgactcgtgg
ctgtcggcagcgtccttccaggagaccactcgtgtgctcaccgatgcggcgatcaactgc
cgtagcgacaagctcataggtctcaaggagaacgtcatcatcggtaagctcatcccggct
ggtaccggcatcaaccggtaccggaacatcacggtgcagccgaccgaagaggcgcgtgcc
gcggcatacgcggtgccgtcgtacgacgatcagtactacagtccggacggcttcggccag
ggaaccggtgctgcagtgccgctcgacgactacggtttctccaacgaataccgctag
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