Rhodococcoides fascians D188: A3L23_03251
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Entry
A3L23_03251 CDS
T04328
Symbol
rapA_1
Name
(GenBank) RNA polymerase-associated protein RapA
Organism
rfa
Rhodococcoides fascians D188
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3670
Helicase_C
SWI2_SNF2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMY54580
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Position
3352201..3355044
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AA seq
947 aa
AA seq
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MLHGLWSPGAGLLLWDDEISTGDEPDLPATHSHVLTRTFRHRARVTFPDSTRRATPRDPV
ELPAIALAPHDAADLLLRTPSTHPLISGDLRFLGHVAQGIERWVRAGRVVPALKLMDGQW
WPRWRLVGGERQRAWLSELAVAMPSVQRANERPKKLLDDMVEELTDPIVRSVLGKPDSEH
PLLSALVRDDPYLDGTQKISTLFDNWRASLTVDEPALVLRLLEPDDQDGETGDADGAPDD
AVESFWTLQVCLRADGEAPRPVPMSRKVDATLLSTAVRKLGEAVAAYPRLRDLPTQEGTL
DLLLPTSVVIDLVEHGATALQATGTTVLLPRAWTRLDPSMRLRVESPAVTKAAADRAVGM
DELVSYDWQLQLGDMVLTEAEMNRLAVSKGDLVRLRGQWVLADGGQLARAAKYVAEHHGD
GTALSTLMREMTLADPPPAPVQDIRATGWAATLLEPGAVPETIPVPDGVRATLRPYQQRG
LDWLAFMSRLGLGAVLADDMGLGKTLQVLTLLAHENSATPTLLVAPMSVVGNWQREAAKF
TPALRVLVHHGPTRLRDEELDRAIAEHDLIVTTYALMAKDRAQLAAQTWRRVVLDEAQHI
KNAGTVQAKAALAIPADHKLALTGTPVENRLDELRSILDFANPGMLGRPSDFRKRFSVPI
ERENDENAVSRLRAITSPFILRRVKTDPTVISDLPEKNEMTVRANLTAEQAALYKAVVDE
MMAQIADAKGMKRKGAVLSALTRLKQVCNHPAHFLSDGSAVLKRGQHRSGKIGLVEDMLD
SVLGDNEKALLFTQFREFGELVAPYFAERFGVQVPFLHGGVSKGKRDEMVEKFQSDDGPP
IMMLSLKAGGTGLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRKNVMVRKLLCVGTV
EERIDSMLVSKQDLADLAVGTGESWVTEMDTAELQELFRLSEDAVGE
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacggtctctggtctcccggtgccggattgctgctctgggacgacgagatcagc
accggagacgaacccgacctaccggcgacacactcgcacgtgctcacccgcacgttccgg
catcgcgcccgcgtgacgtttcccgactccactcgacgcgccacccctcgggatccggtc
gaactcccggcgatcgcgctggctccgcacgatgcggccgacctgttgctccgcaccccg
tcgacccacccgctgatctccggcgacctccggttcctgggccacgtcgcccagggcatc
gaacggtgggtccgggccggacgagtggtgccggcactgaaattgatggacggccagtgg
tggccgcgctggcggctggtcggcggcgagcgtcaacgcgcctggctcagcgagctcgct
gttgcgatgccgtcggtgcagcgagcgaacgaacgaccgaagaagcttctggacgacatg
gtcgaggagctcaccgacccgatcgtcagatcggtgctcggcaagcccgattccgagcac
ccgttgctgtcggccctcgtgcgtgacgatccgtatctcgatgggacgcagaagatctcg
acgctgttcgacaattggcgcgccagcctcaccgtcgacgaaccggcgctggtgctgcgc
ctgctcgaaccggacgaccaggacggcgagacgggtgatgccgacggtgccccggacgat
gccgtcgagtcgttctggacacttcaggtgtgcctgcgcgctgacggggaggcgccgcgt
ccggtcccgatgagtcgcaaggtcgacgcgaccttgctgtcgacggcagtacgcaaactc
ggcgaggccgtggctgcctacccgaggctgcgtgatctgcccacccaggagggcaccctc
gacctgttgttgccgacgtcggtggtcatcgatctcgtcgaacacggtgccactgcgctg
caggccaccggcacgacggtcctgctgccgagggcctggaccaggttggatccgtcgatg
cgattgcgggtcgagtcacccgcggtgaccaaagctgcggccgatcgtgccgtgggtatg
gacgagctggtgtcgtacgactggcaactgcagctgggcgacatggtgctcaccgaggcg
gagatgaaccggctggccgtctcgaagggcgacctcgtccggctgcgcgggcaatgggtg
ctcgccgacgggggacagctggcgcgggctgcgaagtacgtcgccgagcatcacggtgac
gggactgcgctcagcacgttgatgcgtgagatgacgttggccgatccgcctccggctccg
gtccaggacatccgcgccaccggctgggcggcaacgttgctcgaacccggggcggttccg
gaaaccatcccggtgcccgacggtgtccgagcgactctgcggccctaccagcaacgcggt
ctcgactggctcgcgttcatgagccgactcggtctcggtgccgtgctcgccgacgacatg
ggcctgggcaagacactgcaggtgctcacgctgctcgctcacgagaacagtgcgactccg
acgctgttggtggccccgatgtcggtggtcggtaactggcaacgtgaggccgcgaaattc
actcctgcactgcgtgttctggtgcatcacggtccgacgcggttacgcgacgaggagctc
gatcgagcgatcgcggagcacgacctgatcgtcaccacgtacgcattgatggccaaggac
cgcgcgcagttggccgcacagacgtggcgtcgcgtggttctcgacgaggcgcagcacatc
aagaatgcaggcaccgtgcaggcgaaggcggcgctggccattccggccgatcacaaactg
gcgctcaccgggacgccggtggagaaccggctggacgagctgaggtccattctggatttc
gcgaacccgggcatgctggggcggccgtcggacttcaggaagcggttctcggtgccgatc
gagcgggagaacgacgagaacgcggtctcgcggctgcgtgccatcacgtctccgttcatt
ctgcgtcgcgtcaagaccgatcccacggtcatctctgatctgccggagaagaacgaaatg
accgtgcgcgccaacctcactgccgagcaggcagcgttgtacaaggcggtcgtcgacgag
atgatggcgcagatcgccgacgcgaagggcatgaagcgcaagggtgcggtgctctcggcc
ctcacccgcctcaaacaggtgtgcaatcaccccgcgcatttcctgtccgacggttcggcg
gtactcaagcgaggtcagcaccgttccggaaagatcggattggtggaggacatgctcgat
tccgttctcggtgacaacgagaaggcgttgttgttcacgcagtttcgagagttcggtgag
ctcgtggcaccgtatttcgccgagcgtttcggagttcaggtgccgttcctgcacggcggc
gtgagcaagggcaagcgcgatgagatggtcgagaagttccagagcgacgacggtccgccg
atcatgatgctctcgctcaaggccggcggtaccgggctcaatctcactgccgccaatcat
gttgtgcacctagaccgttggtggaatccggcggtggagaaccaggcgaccgaccgcgct
ttccgtatcggccagcgcaagaatgtgatggtgcgcaagctgctgtgtgtgggcaccgtg
gaggaacgcatcgattcgatgctggtgtcgaagcaggatctggcggatctggcggtgggc
accggtgagagctgggtgaccgagatggacactgcggaactgcaggaactgtttcgtctc
agcgaagacgcggtgggggagtga
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