Rhodococcoides fascians D188: A3L23_03543
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Entry
A3L23_03543 CDS
T04328
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rfa
Rhodococcoides fascians D188
Pathway
rfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A3L23_03543 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfa03400
]
A3L23_03543 (recB)
Enzymes [BR:
rfa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A3L23_03543 (recB)
DNA repair and recombination proteins [BR:
rfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A3L23_03543 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
PDDEXK_1
UvrD_C_2
Viral_helicase1
FliG_M
Motif
Other DBs
NCBI-ProteinID:
AMY54868
LinkDB
All DBs
Position
3691168..3694500
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AA seq
1110 aa
AA seq
DB search
MTAARGFDLLGPMPTGTTVLEASAGTGKTYAIVGLAARYIAEGLAEIADLLLVTFSRAAT
QELRDRTRSRFASIARDLGDPDAARGARDPLVAFLAAADDDEVDKRRRRLRKALSDFDAG
TIVTTHSFCQRMLDGLGIAGEREPESTFVESVSDLLEQVVDDLYLQMFSGDDEAPPFGRR
DAQQLAAAAVGDQQSILYPDIDDLDGDDGNREAALRVQFAREARREVERRKRLLGIRDYN
DLLGLLHSVLSDPVHGEAACARVRDRFRVVLIDEFQDTDPMQWDILRRAFHGYTTLILVG
DPKQAIYAFRGAEVLSYLDAVQSADHLYELTANWRSDSGLLDALDHLYGGAALGHDDIVV
HRVEARNPFSRMAGHPPLRLRYLPRTGAGPLRSGFPAVDRLRSRVAADVAAEIVTLLSGN
AVMDRPDGPRTVEPRDIAVLTRTTKQVALIRDALDAVGVPSVVSSSTSVFGTDSARHWLW
LLQAIEQPHRTDRVRLAALTPLLGWTAAQLDSGAEDALSQVSSRLREYSVLFDEAGFAAV
FERVSAQSGLDARLLAVEAGERTMTDLRHIAQLLNRAAVSESYGITALTRWLTDRIKEPA
AGGSTDRSRRLDSDSAAVQIMTTHGSKGLEFPVVYLPYAWDTLYFSSPSTLLLHEDGHRI
RDVGGPSGAGYAARKLVNDREEAGEELRLLYVGLTRAQCQVVLWWAPGRNTATSSLHRML
FGRIPGIAQPEPSYKVLDDATTVNRVQSWVGPSADLISIEAVGPTPPSDQQWVRPEEEHR
DVTAARFGRALDLLWRRTSYSALTAHAHDASPVEPEVGVTSEAERPEKADEPVEPPLGSA
NPDEPVDGIASPMNGMPAGAAFGTLVHEALEHVDTSAADLLAELEQRCRAAVASRMADVD
PTALAAALLPVMQTPLGFGTLADIAPNDHLAELDFELPLAGGDDPVESSVTLTSVAQLLR
RHLDPADVLADYADLLDAVEATPLRGFLTGSIDSVLRVPGPRYIVVDYKTNRLARGDLTT
GNFTREKMAQEMMRSHYPLQAILYAVALHRYLRWRQPNYRPETHLGGVRYLFVRGMVGPQ
TPAGCGVFDWDPPAALVVELSDLLAGKVQR
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcacgcggattcgacctcctcggtccgatgccgaccgggacgaccgtgctc
gaggccagcgccggaacgggcaagacgtacgcgatcgtcggacttgcggcgcggtacatc
gccgaaggactggccgagatcgcggatctactgctggtgacgttcagtcgggccgcgacc
caggaactgcgcgatcgcacccgcagccggttcgcgtcgatcgcccgagacctcggtgat
ccggacgctgcgcgtggtgctcgcgaccccctcgtcgcctttctcgccgcggcagacgac
gacgaagtggacaagcggcgccgacgactgcgtaaagcgctgtcggacttcgacgccggg
acgatcgtcaccacgcacagcttctgtcaacgcatgctcgacgggctgggtatcgcgggt
gagcgcgaacccgaatccacgttcgtcgagtcggtgtcggatctgctcgagcaggtggtc
gacgatctgtatctgcagatgttcagcggcgacgacgaggcaccaccgttcgggcgacgc
gacgcccaacaactggccgcggcagccgtcggagatcaacaatccatcctgtaccccgac
atcgacgacctcgacggtgacgacggcaaccgggaagccgccctgcgggtgcagttcgct
cgggaggcccgccgtgaggtcgagcgtcgcaaacgtcttctcggcatccgcgactacaac
gatctactcggactgctgcactcggtgttgtccgatcccgtgcacggggaggcagcatgc
gcgcgcgtgcgagaccggttccgtgtcgtgttgatcgacgaattccaggacaccgacccc
atgcagtgggacatcctgcgccgggcctttcacggctacacgacattgatcctcgtcgga
gatccgaagcaggccatctacgctttccgcggtgccgaagtgctgagttatctggatgca
gtgcagtcggccgatcatctgtacgagctgacggcgaactggcgtagcgactccgggctc
ctcgacgcgttggaccacctctacggaggtgccgccctcgggcacgacgatatcgtcgtc
catcgcgtcgaagcgcggaacccgttctcgcgcatggcaggacatcctccgctgcggctg
cgctatctcccgcgcaccggagcagggccgttacgttcgggattcccggcggtggatcga
cttcgctctcgggtggctgcagatgtggcggccgagatcgtgacgctcctgtcagggaac
gccgtcatggaccggccggacgggccgaggacggtcgaaccgcgggacattgcggtgttg
actcgcacgaccaaacaggttgcgctgattcgagatgcgctcgacgcagtgggtgtgccg
tcggtggtgtcgagcagcaccagcgtcttcggcaccgacagtgcgcgacactggttgtgg
ctactgcaagcgatcgaacaaccgcaccgcaccgaccgcgtcagactcgcagccctgaca
cctttgctcggttggactgccgcccaactcgattccggggccgaggacgctctgtcgcag
gtgagcagccggctgcgtgagtactccgtgctgttcgacgaggcgggtttcgcggcagtg
ttcgagcgggtgtcggcgcagtcgggtctcgatgctcggttgctcgcggtcgaggcaggg
gagcgcacgatgaccgacctgcggcacatcgcccaactgctcaatcgcgcagcggtatcc
gaatcgtacggaatcaccgctctcactcggtggctcaccgatcgaatcaaggaaccggca
gccggcggttccaccgatcgcagtcgccggctcgacagtgactcggcggcagtgcagatc
atgacaacgcacgggagcaaggggctggaatttcccgtcgtctaccttccgtacgcctgg
gacacgctctacttcagctcaccgtcgaccctgctgctgcacgaggacggccaccgcatc
cgggacgtcggcggtccctccggggccggctacgcagcacgaaagcttgtcaacgatcgt
gaagaagccggagaagaactacggctgctgtacgtgggactcaccagagcccagtgccag
gtggtgttgtggtgggcaccgggacgcaacactgctacgtcgtcgttgcaccgcatgctg
ttcggccgcattccggggattgcgcagccggagccgtcgtacaaggtgctcgacgacgcc
actaccgtcaaccgcgtgcaatcctgggtcggtccgtcagcggatctgatctcgatcgag
gcagtcggccccacaccaccctcggatcagcagtgggtgcgccccgaggaggaacaccgc
gacgtcactgccgctcgcttcgggcgtgctctggatctgctgtggcgtcgaacgtcgtac
tcggccttgaccgctcacgcgcacgatgcgtcgcccgtcgagccggaggtgggggtgacc
agtgaggccgagcggcccgagaaagcggatgagcctgtcgaacctccgctgggaagcgcg
aacccggacgagcccgtggacgggatcgcgtcacctatgaacggaatgccggccggtgcc
gcattcggaacgctggtgcacgaggccctcgagcacgtcgatacctccgcagccgatcta
ctggccgaactcgagcagcgctgcagagctgccgttgcctcacggatggcagatgtcgat
ccgacggctttggcagccgccctgttgccggtgatgcagacaccgttgggcttcgggacg
ctggccgacatcgcgccgaatgaccacctggccgagctggatttcgagctgcccttggcc
ggaggcgacgacccggtggaatcgagcgtgactctgacatcggttgcgcagctcttgcgt
cgacatctcgacccggcggatgtcctcgcggactacgccgatctgctcgatgcagtggaa
gccaccccactgcgcggctttctcaccgggagtatcgactccgttcttcgggtacccggc
cctcgctacatcgtggtcgactacaagaccaaccgcctggcccgaggcgatctgacgacc
ggcaatttcacgcgcgagaagatggcgcaggagatgatgcggtcgcactatccgctgcag
gccattctgtatgccgttgcgttgcacaggtatttgcgatggcggcaaccgaactaccgg
ccggagacgcatctcggcggagtacggtacctgttcgttcggggcatggtggggccgcag
actccggccggctgcggtgtgttcgactgggatccgcctgcggcactggtggtcgagttg
tcggatctgctcgccggaaaggtgcaacgatga
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