Rhodococcoides fascians D188: A3L23_03544
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Entry
A3L23_03544 CDS
T04328
Symbol
recD_3
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rfa
Rhodococcoides fascians D188
Pathway
rfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A3L23_03544 (recD_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfa03400
]
A3L23_03544 (recD_3)
Enzymes [BR:
rfa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A3L23_03544 (recD_3)
DNA repair and recombination proteins [BR:
rfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A3L23_03544 (recD_3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
NAT10_TcmA_helicase
AAA_22
TraI_hel_assoc_N
SH3_13
AAA_24
T2SSE
nSTAND3
SLFN-g3_helicase
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AMY54869
LinkDB
All DBs
Position
3694497..3696359
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AA seq
620 aa
AA seq
DB search
MTSVSTALRGGGILRSFNDAGVLTAADVHVALRLGALAGEASEPVLLATALTVRAVRSGS
ICLDLQRLRDVTVDEESDVDPSLLPWPDLSDVLDGLAVSPLVVGSANGPLTPLKLVRTDL
GELLYLDRYHLQENTVRGILDARSQSHPVVDGAKIDRALAELFIDESGAPTTPPDRQRIA
AALAATHWTTVIAGGPGTGKTHTVARILALLVREHGSDVRIGLAAPTGKAAARLQESVAE
QAGLLGLPAELKAMTLHRLLGWKPGSKTRFRHDSHNRLPYDVVVVDETSMVSLTMMCRLL
EAVRPESRLILVGDPDQLTSVDAGAVLADLVARPVTGTENPVLAHLVDADFDAAEDPDEA
ALSAFERDRLRGGVVRLSRGRRFGGAIARLAVAVRDGRGDEVMKLLESGDDQISFHAPED
TDALRADVVDTAAEVTAAATRGDAAAALLGLEKHRLLCAHREGRWGVALWDRRALEWVGE
ANKAFLDPAYWYPGQPLLVTANDHEARIYNGDTGVVVSGENGTPMAAFARGRGHVLIHPN
VLSAVQTVYAMTIHRSQGSQYDTVSVLLPAEASTLLTRELLYTAITRARSHVRVIGTEEA
IRAGVERQVLRASGLRRRIL
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtgtctcgacggcgctgcgcggcggcggaattctgcggtccttcaacgacgcc
ggtgtactgacagcggccgacgtgcacgtggcgttgcggctcggtgccctggccggggaa
gcctccgaaccggtgctgctcgccacggctctgacggtgcgcgcagtgcgatccggatcg
atatgtctcgacctgcagcgactgcgtgatgtcacggtggacgaggaatcggacgtggat
ccgagccttcttccctggcccgatctgtccgacgttctcgacgggttggcggtcagcccg
ctcgtggtcggcagcgccaacgggccgctgacgccgctcaagctggtgcgcaccgacctg
ggtgaactgctgtacctggatcgatatcacttgcaggagaacacagttcgaggaatactc
gacgctcgatcgcagtcgcaccccgtcgtcgacggtgcaaagatcgaccgtgcgttggcc
gaattgttcatcgacgaatccggcgcacccaccacccctcccgatcgacagcggattgca
gcagccctcgcggcgacgcactggaccactgtcatagcgggcgggccgggcaccggtaag
acccacacggtggctcgaattctggcgctgttggttcgagaacacggcagcgatgtgaga
atcggtcttgccgcccccaccggcaaggctgccgctcgtctgcaggagtcggtggccgag
caagcgggactgctgggtctcccggcagaactgaaagcaatgactctgcatcgcctgctc
gggtggaaaccgggcagcaagaccaggtttcgtcatgactcccacaatcgactgccgtac
gacgtggtggtcgtcgacgagacgtcgatggtgtcgttgacgatgatgtgccggctgctc
gaagcagtgcgaccggaatcgcggttgatactggtgggcgatcccgatcagttgacgtcc
gtcgacgccggagcagtgttggccgacctcgtcgcacggccggtcactggcaccgagaac
cctgtgttggcgcacctggtcgacgcggatttcgacgcagccgaggatccggacgaggcg
gcgctcagtgcgttcgagcgagacaggttgcgcggcggagtggttcggctcagccgcggt
cgacgattcggtggcgcgatcgcccgtctggccgtcgcagttcgagacggccgcggtgac
gaggtgatgaaactactcgaatccggtgacgaccagatctcgttccatgcacccgaggac
accgacgcattgcgggccgacgtggtcgacaccgccgccgaggtcacagcggcggcaacc
cgcggtgacgccgccgcggcgctgctgggactggagaagcatcgacttctgtgcgcgcac
cgtgaggggcggtggggcgttgcgctgtgggatcggcgggcactcgagtgggtgggagaa
gcgaacaaggccttcctcgaccccgcctactggtaccccggtcagccgctgctggtgacg
gccaacgatcacgaagcgcgaatctacaacggagacacgggtgttgtggtgtcgggtgag
aacggaactccgatggctgctttcgcgcggggtcgcggccacgttctcattcacccgaac
gtcctctctgccgtccagaccgtgtacgcgatgacgattcaccggagccagggaagtcag
tacgacaccgtgtcggttctgttgcccgccgaagcatcgactctgctcactcgcgagttg
ctctacaccgcgatcacccgtgcgcggtcgcatgtacgggtgatcggcaccgaggaggcc
atccgagccggagtcgaacgtcaggtcctgcgggccagcggattgcggcgaaggattctg
tag
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