Rhodococcoides fascians D188: A3L23_04044
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Entry
A3L23_04044 CDS
T04328
Symbol
polA_1
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rfa
Rhodococcoides fascians D188
Pathway
rfa03030
DNA replication
rfa03410
Base excision repair
rfa03420
Nucleotide excision repair
rfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3L23_04044 (polA_1)
03410 Base excision repair
A3L23_04044 (polA_1)
03420 Nucleotide excision repair
A3L23_04044 (polA_1)
03440 Homologous recombination
A3L23_04044 (polA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfa03032
]
A3L23_04044 (polA_1)
03400 DNA repair and recombination proteins [BR:
rfa03400
]
A3L23_04044 (polA_1)
Enzymes [BR:
rfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A3L23_04044 (polA_1)
DNA replication proteins [BR:
rfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3L23_04044 (polA_1)
DNA repair and recombination proteins [BR:
rfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
A3L23_04044 (polA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3L23_04044 (polA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_5
LAMTOR
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AMY55356
LinkDB
All DBs
Position
4225246..4227987
Genome browser
AA seq
913 aa
AA seq
DB search
MSPVTDKSAAPAARTDAKSAEERPTLLLIDGHSMAFRAFFALPADNFKTTSGQSTNAVYG
FTSMLINLLRDEKPTHIAAAFDVSRQTFRAERFPEYKANRSKTPDEFAGQVDITKDVLGA
MGIPVMAEAGFEADDIIATLVTQAEALGYRVLVVTGDRDALQLVTDNVTVLYPRKGVSDL
TRFTPDEVATKYGLTPSQYPDFAALRGDPSDNLPGIPGVGEKTATKWIIEYGSLTALVDN
VDKVKGKVGDALRANLSSVVLNRELTEMVRDVPLPFTPDQLELAPWDREKIHALFDDLEF
RILRDRLFETLASVEPEAEEGFDVRGGIVAPGELAAWLDEHASDGRRSGVSILGPRRPYD
SDATSVAIAAADGEGAFVTTTALDESDERALAAWFADADRPKALHEAKWALHAVRGRGWT
LGGLTTDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEDAGEGQMSLLDAEDTADAAFA
EGEILKARAVIDLADALDAELAAIESTTLLSEMELPLLTVLADIEATGIAVDGDHLRSLQ
SGFAAQVDEAANSAYGVIDKQINLGSPKQLQVVLFEELDMPKTKKTKTGYTTDADALQGL
FEKTEHPFLKFLLDHRDATRMKVTVDGLLKSVADDGRIHTTFNQTVAATGRLSSTEPNLQ
NIPVRNEAGRHIRDGFVVGAGYDTLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSF
VGSRAFGVPIDEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTDEAKQQMEAYFARFG
GVRDYLRNAVEEARKVGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADII
KVAMIDVHKSLAESTLKSRMLLQVHDELVLEVVDSEREEVEALVRNKMSSAIELSVPLEV
SVGTGRSWDAAAH
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccagtaaccgacaaaagtgcagcacccgcagcccggaccgatgcgaagtcagcc
gaagagcgtccgacgctgctcctcatcgacggtcactcgatggccttccgtgccttcttc
gcgttgccggcggacaatttcaagaccacgagcggtcagtccaccaatgccgtgtacggg
ttcacctcgatgctgatcaacctgttgcgagacgagaagccgacgcacatcgccgccgcc
ttcgacgtgtcacggcaaacgttccgagccgagcggttccccgaatacaaggcgaaccgc
agcaagacgccggacgagttcgcgggccaggtggacatcaccaaggatgtgctcggtgcc
atgggcattcccgtgatggccgaggcagggttcgaagccgacgacatcatcgccactctg
gtcacgcaggccgaggcgctgggctatcgcgtcctcgtggtcaccggcgatcgtgacgca
ctgcagctggtcaccgacaacgtcacggtgctctatccccgcaagggtgtctcggacctg
acgcgattcaccccggacgaggtcgccaccaaatacggtctgacgccgtcgcagtacccg
gacttcgcagctctgcgcggagatccgagcgacaaccttcccggcattcccggcgtcggg
gagaagacggcgaccaagtggatcatcgaatacgggtcgctcaccgccctcgtcgacaac
gtcgacaaggtgaagggcaaggtgggcgacgcattgcgggccaacctgtcgagtgtggtg
ctcaaccgcgagctcaccgagatggtgcgcgacgtgccgttgcccttcacgcccgatcaa
ctcgagctggccccgtgggatcgcgagaagatccacgccctgttcgacgatctggagttt
cgcatcctgcgggatcgactgttcgagacacttgcctcggtcgagcccgaggcagaagaa
gggttcgacgttcggggcggcatcgtcgcgccaggggagttggcggcgtggctggacgag
cacgcgtccgacggtcggcgtagcggggtatccatcctcggaccgcgcaggccgtacgac
agcgacgcgacctcggtggccatcgcggcagcagacggcgaaggtgccttcgtcaccacg
acggctctcgacgaatccgacgaacgcgctctggccgcgtggttcgccgatgcggatcga
cccaaagctctgcacgaggcgaagtgggcactgcacgctgttcgtggtcgaggatggacg
ctcggtgggttgacgaccgataccgcgctcgcggcgtatctcgtccggcccggtcagcgg
tctttcaacctcgacgacttgtcgctgcgctacctcaagcgcgaactacgcgtcgaagat
gccggcgaggggcagatgtcgcttctcgacgccgaggacaccgctgacgcggcattcgcc
gagggcgaaattctcaaggcaagggcggtcatcgatctcgccgacgccctggacgcggaa
ctcgcggcaatcgagtcgaccactctgctctcggagatggaactgccgctgctgacagtg
cttgccgatatcgaagcgacgggcatcgcagtggacggcgatcacctgcgctcgctgcaa
tcgggttttgctgcgcaggtcgacgaggccgcgaactccgcgtacggcgtgatcgacaag
cagataaatctcggatcgcccaaacagctgcaggtggtgctgttcgaggaactcgacatg
cccaagaccaagaagaccaagaccgggtacaccaccgacgccgatgctcttcaggggctg
ttcgagaagaccgagcatccgttcctgaagttcctgctcgatcaccgtgatgccacacgg
atgaaggtgacggtggacggcctgctcaagtctgtcgccgacgacggccgcattcacacc
acgttcaatcagaccgtcgcggccaccggacgactgtcgtcgaccgaaccgaacctgcag
aacatcccggtgcggaacgaggcgggtcgccacatccgcgacggctttgtggtcggtgcc
ggctacgacaccctgctcaccgccgattacagccagatcgagatgcgcatcatggcgcac
gtatccggtgacgaggggctgatcgaagcgttcaacaccggtgaggacctgcacagcttc
gtcggttcgcgcgcgttcggcgtaccgatcgacgaggtcaccccggaactacgccgtcga
gtcaaggccatgtcgtacggcctcgcctacggactcagcgcgttcggcctcgccgcgcag
ttgaagatctccaccgacgaagccaagcagcagatggaggcgtacttcgctcgcttcggc
ggcgtgcgcgactacctgcgcaacgcggtcgaggaagcccgaaaggtgggctacacctcg
acgctgtacggccgtcgtcgttacctgccagatctcaacagcgacaatcgtcagcgtcgc
gaggtcgccgagcgtgcggcactcaacgctccgatccagggcactgccgcagacatcatc
aaggtagcgatgatcgacgtgcacaagtctctggcggagtcgaccttgaagtcgcgcatg
ctgttgcaggtgcacgacgaactggtactcgaggtcgtcgactccgagcgcgaggaagtc
gaggcgttggtgcgtaacaagatgtcgtcggccatcgaattgtcggtgcccctcgaggtg
tcggtcggtaccggccgcagttgggatgccgcagctcactga
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