Roseburia faecis: ACIRUI_01810
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Entry
ACIRUI_01810 CDS
T10789
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rfc Roseburia faecis
Pathway
rfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACIRUI_01810 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfc03021
]
ACIRUI_01810 (rho)
03019 Messenger RNA biogenesis [BR:
rfc03019
]
ACIRUI_01810 (rho)
Transcription machinery [BR:
rfc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACIRUI_01810 (rho)
Messenger RNA biogenesis [BR:
rfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACIRUI_01810 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_14
NACHT
AAA_18
AAA_25
SAP
AAA
AAA_24
Motif
Other DBs
NCBI-ProteinID:
XKQ65695
LinkDB
All DBs
Position
348837..350339
Genome browser
AA seq
500 aa
AA seq
DB search
MREKYESLSLVVLKDLAKARGLKGISTMKKGELIDRMLQEDEREKEAAPKAKTVYTARTA
SGQEGRKHTPKPRREEHSSHTEDHSHPEHGESMHAEHGAHASQEQIYKAQEDNDSAAIKE
DIVSLDSGNTASGILEVMADGFGFIRCENYLPGEHDVYVAPSQIRRFNLKTGDIVCGNTK
VKSEREKFSALLYVTSVNGYHPSEAQKRTNFEDLTPIFPNVRLRMERPGGSVAMRVMDIV
SPIGKGQRGMIVSPPKAGKTTLLKEVAKSVKENNPEMHLIILLIDERPEEVTDIKEAIEG
ENVEVIYSTFDETAEHHKRVSEMVIERAKRLVEHKKDVMILLDSITRLARAYNLTCTPSG
RTLSGGLDPAALHMPKRFFGAARNMREGGSLTILATALVDTGSKMDDVVFEEFKGTGNME
LVLDRKLSEKRIFPAVDIVKSGTRRDDLLLDPQEREGVENMRRALNGMRSDEAVENILNM
FAHTRTNADFINLVRKNRIL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgagggaaaaatatgagagtctttctttggttgtgttaaaagacctggcgaaggcacgc
ggactcaaaggaatctcaacaatgaaaaagggagaactgattgatcggatgctgcaggaa
gatgagcgggaaaaagaggcagcgccgaaggcaaagacggtatatacagcgcggacagct
tccggacaggaaggaagaaagcatacaccaaaaccgcgaagagaagagcattcgtcccat
acggaggatcacagccatccggagcatggagaaagcatgcatgcagaacatggagcacat
gcatcacaggaacagatctataaggcacaggaggataatgacagtgctgcgatcaaagaa
gatatcgtcagcctcgacagtggaaatacagcgagcggtattctggaggttatggcagac
ggattcggttttatccgctgtgaaaactatctgccgggggaacatgacgtttatgtggcg
ccgtcccagatccgcagatttaatctaaagacaggagatattgtctgtggaaataccaaa
gtgaaatccgagcgggagaaattttccgcccttttgtatgtgacttcggtaaacggatat
catccttcggaagcacagaagcggacaaactttgaggatctgaccccgatttttccgaat
gtgcgtctgcgcatggaacgtcccggcggttcggttgcaatgcgtgtgatggatattgtt
tccccgatcggtaaagggcagcgtggtatgattgtatccccaccgaaagcaggtaagaca
acgcttttaaaggaagtcgcaaagtcggtaaaggaaaataacccggagatgcatctgatc
attctgctgattgacgagcggccggaggaagtaaccgatattaaagaggcaattgaggga
gaaaatgtagaggtcatttattccactttcgatgagaccgcagaacaccataagcgggta
tcggaaatggtaatcgagcgtgcaaaacgtctggtggaacataaaaaggatgtgatgatt
ctcctcgacagtatcacacgtctggcacgtgcctacaacctgacctgtacgccgagcggc
cgtacactttccggtggtcttgatccggcggcactgcacatgccgaaacgattttttggt
gcagcccggaatatgagagaaggcggaagcctgaccattcttgccacggcactggtcgat
accggaagcaagatggatgacgtggtatttgaggaatttaagggaaccggtaacatggaa
cttgttcttgaccggaaactttccgaaaagagaattttcccggcggtggatattgtaaag
tccggcacgcgaagagacgatctgctgcttgatccgcaggagcgtgagggcgtggagaat
atgcgccgggcattaaacggcatgcggtcggatgaggctgtggagaatattttaaatatg
tttgcacacacgcgtacaaatgctgattttatcaatcttgtaagaaaaaacagaattctt
taa
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