Rhynchophorus ferrugineus (red palm weevil): 143192814
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Entry
143192814 CDS
T11283
Symbol
Cnot4
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143192814 (Cnot4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rfg03000
]
143192814 (Cnot4)
03019 Messenger RNA biogenesis [BR:
rfg03019
]
143192814 (Cnot4)
04121 Ubiquitin system [BR:
rfg04121
]
143192814 (Cnot4)
Enzymes [BR:
rfg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
143192814 (Cnot4)
Transcription factors [BR:
rfg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
143192814 (Cnot4)
Messenger RNA biogenesis [BR:
rfg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143192814 (Cnot4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143192814 (Cnot4)
Ubiquitin system [BR:
rfg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
143192814 (Cnot4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
zf-C3HC4_2
Nab2-like_zf-CCCH_
zf-C3HC4
Rcat_RNF216
Motif
Other DBs
NCBI-GeneID:
143192814
NCBI-ProteinID:
XP_076254632
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MSVLNQSGEEQVECPLCMEPLEVDDLNFFPCTCGYQICRFCWHRIRLDENGGLCPACRKA
YSEDPADFIPLSMEQVAKLKAEKRQRDQQRKAKLTEGRKYLTGVRIVQKNLVFVVGLPPR
LADPDILKRHEYFGKFGKIHKVVINQSTSYAGSQGPSASAYVTYMKSDDALRAIQAVNNV
TIDNRVIKSSLGTTKYCSTFLKHQPCTKLDCMYLHENGDPEAIFSKEEMHAGKHQEYEKK
LHEELLARTKAQNGPMCATENKGTQSNKSTKDGTVGINPLNTNASNKESSGTSKESWPQL
DKEKKQEKDKGRKGKTKNNVSESRNKEIVGSNATKTSNDSKIIQEKNSSNTSNSQNSSKT
EAKETDSDSSSLLSANSNPSPSPSTTQTPPLEVGTPPICTETTIAYSSATSSGTHTTTPL
TAKLSSGLIGESEDNSYFSSSGFNKIQSTLDVLSDRENKDESRLNGDSDADRHLGGDALQ
EEQNHQVLTDTLPSINTTEDWAAAFGFAGQRFREQEMLQQKLSQRDVSKLSNFPGFGPVT
IQENAFEKGLDNFSGFYDLPKLEENLIDVLTNKSNGFNVRTHETNTPLPAAHMSNGLGHN
MSKFFSDYHKYSSKEPPSSSPYPNNLNGVHNPYHNMLPQKQLEEQLMNLGISQNSYLGAQ
TTVYQNGLSTPTYSNGDSSLLNSGLSSLQHLYHKQLMSPPSQNSRNSEAELDFDPFQETQ
KALAEMMANEQNHKTSINSSGRNGQHQLNGLVQNNQNGNHILPPPPGFLQQQTHMNSFGS
KILPFLKMSNSQQVNNSSNNWPTNFNTQMQQPQKSKSHQKYLQIIKVGMFRCHEHDWKVL
DPAILSSSRNFQLAQIPPSVRETYPPIQPLGNQQISQNGLLRSFDYPQNNSQLNFSTFTQ
QLQPNFNTFTRLNTPQNLNWFTNDLNSQISSPPGFRNSQTSKQQEC
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttttaaatcaaagtggtgaggaacaagtagaatgtcccttatgtatggagcct
ttggaagtcgatgatttaaattttttcccttgtacttgtggatatcagatatgtcgcttc
tgttggcatcgaatccgtttagatgaaaatggcggcctgtgtcctgcttgccgaaaggca
tattctgaagaccctgctgattttatacctttatcaatggaacaggtcgccaagttgaaa
gcagagaaaaggcagcgtgatcagcaacgtaaagccaagttaacagagggtagaaaatat
ctaacgggtgttaggatagtacagaaaaatttggtatttgtggttggattgccacctaga
cttgcagaccctgatatcttaaaacgccatgagtattttggaaaatttggaaaaattcac
aaagtggttattaaccaatcaacatcatatgcggggtcccaaggacccagtgcaagtgcc
tatgtaacttatatgaagagtgatgatgcattaagggccatacaagctgtgaataatgtt
acaatagacaatagggtaataaagtcaagtctaggaactaccaagtactgttctaccttt
ttgaaacaccagccatgtactaaactagattgcatgtatttacacgaaaatggtgaccca
gaagcaattttttctaaagaagaaatgcacgcaggaaaacaccaagaatatgaaaaaaag
cttcatgaagaacttttagcaaggacaaaggcacagaatggaccaatgtgtgcaacagaa
aacaaaggaacacagtccaataaaagtactaaggatgggacagtagggattaacccatta
aatacaaatgcatcaaataaggaatctagcggaacaagtaaggaaagttggcctcaatta
gataaagaaaagaagcaagaaaaggataaaggtagaaaaggaaagacaaaaaataacgtc
agtgaatctagaaacaaggaaattgtaggaagtaatgccacaaaaacttctaatgatagt
aaaattattcaagaaaaaaatagttcaaatactagtaatagtcaaaatagtagtaaaacg
gaagcaaaagaaacagactcagattcgtcgtctttactatcggccaattctaatccatca
ccttccccatcgactacccagacaccacctcttgaagtcggtacacctccaatttgtaca
gaaactactattgcatatagttcggcgacgagcagcggtactcacacaacaactccttta
acagcaaaactgtctagtggtttgataggtgaatctgaagataactcatattttagctct
agtggatttaacaaaatacaaagtacccttgacgttttatcagatagggaaaataaagac
gagtctaggttaaatggagatagtgatgctgacagacatttaggaggagatgcgttacaa
gaagaacaaaatcatcaagttttaactgatacattaccaagtataaatacaactgaagac
tgggcagctgcgtttggctttgctggccagcgtttccgagaacaggagatgctgcaacag
aaattatcacagcgagatgttagtaagttatctaatttccccgggttcggacctgtaacg
atccaagagaatgccttcgaaaaaggattagataatttttctgggttttacgatttgccg
aaattagaagagaatctaattgatgttttaaccaataaaagtaacgggtttaatgtcaga
acacacgagactaacacacctcttcctgcggcccatatgtctaatggattaggtcataat
atgtcaaaattcttcagtgattatcacaaatatagttcaaaggagccacctagttcatca
ccttacccaaataatttaaatggtgttcacaatccctatcacaatatgctgccgcaaaaa
cagttagaagaacaattaatgaatctcggaatttcacaaaatagttatcttggagctcaa
acgactgtgtatcaaaatggattatcaacaccaacatattcaaatggggatagttcttta
ttaaattcaggtttaagttctttacaacatttatatcataaacagttaatgtctccaccc
tcacaaaattcacgaaattcagaagcagaattagattttgatcctttccaagaaacacaa
aaggcattagcagaaatgatggcaaatgagcaaaaccacaaaacgtccataaatagttca
ggtcgaaatggtcagcatcagttgaatggtttagtacagaataatcaaaatggtaaccat
atacttccaccaccacctggatttttacaacagcaaacacatatgaattcctttggcagc
aaaattttacctttccttaaaatgtcaaatagccaacaagtaaataattcttcaaataat
tggcctactaatttcaatacacaaatgcaacaaccacaaaaaagtaagtcacatcaaaaa
tatttacagataataaaagttggtatgtttagatgtcacgagcacgattggaaagtatta
gatccagctattctatcatccagtcggaattttcaactagctcaaataccgccatcagtc
agagaaacatacccccctatccaaccattaggaaatcaacaaatttcacagaatggcctt
ttgaggtcttttgactatcctcaaaacaatagtcaactaaatttttcaacattcacacaa
caactgcagccaaatttcaatacgtttacacgtctaaatacaccacaaaacttaaattgg
tttacaaacgatctaaattcacaaatttccagcccaccaggttttagaaatagtcagaca
tcaaaacaacaggaatgctag
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