Rhynchophorus ferrugineus (red palm weevil): 143198036
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Entry
143198036 CDS
T11283
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
rfg
Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143198036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rfg03041
]
143198036
Enzymes [BR:
rfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143198036
Spliceosome [BR:
rfg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
143198036
Complex B
143198036
Complex C
U2 SnRNP specific factors
143198036
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Rib_recp_KP_reg
Motif
Other DBs
NCBI-GeneID:
143198036
NCBI-ProteinID:
XP_076263078
LinkDB
All DBs
Position
Unknown
AA seq
742 aa
AA seq
DB search
MSGFNYSNFNSAKMNAVPPPSTLTTNTTHKKMNSVPPPGNLGSGARHNTIPPPSSGLSKQ
GYSTMTAISQNALTSSWGTGARKRAVTEDEYFDQDDEEQVPDLAYIPSPGSPTRLEMSKK
KALEEDDEDDPLDAFMAGIEAQVKQESQQSCSSSQQHPKAVRNDLEEEDNEESYYRYMEE
NPNAGVLPVEEDGIEIEYDEDGNPIPPDKKKIIDPLPPIDHALIEYKPFQKNFYIEHPEI
KLLSSTKASELRKKYDLHVSGTDIPKPVASFGHFGFDDKLLKAITKAEYSSPTPIQAQGV
PCAMMGRDVLGVAQTGSGKTAAFLWPLLKHVSVQKPVEEGEGPIALILAPTRELAIQIYN
EAKKFARVYDLRVICAYGGGSKWEQSLALKEGAEIVVATPGRIIDHVKGGATNLQRVTFL
VLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFRKKIERLAKDALKDPIKISQGIT
GQANEDVTQQTLLLPSQEAKREWLFGKLVELMSAGSVLIFVTKKLDAEKVAKDLLVKEYD
CLLLHGDMEQAERNKVITAFKKQEVPLLVATDVAARGLDIPHIRTVINYDIARDIDTHTH
RIGRTGRAGMQGTAYTLLTFKDKEFVGHIVKNLEAANQEVPQDVLDLALQSSWFRKQRFK
KKDQSPNVGGIGLGFKETSSSMKGFVVSSSSSSPATSKGPATDRLTAMKDAFKAQYMSQF
RASTENPVPPPPQPRRKKSRWE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcttcaactattccaatttcaactcggcaaagatgaacgctgtgccaccgcca
agcaccttaactacgaatactactcataaaaagatgaattctgttcctccaccaggaaac
ttaggctcaggggcaaggcataataccataccacctccatcaagtggtttaagtaaacag
ggttattcaacaatgacagcaattagtcaaaatgccctcacttcctcttggggtacaggt
gcaagaaaacgtgctgttactgaagatgaatactttgatcaggatgatgaggaacaagtt
cctgatcttgcatatattccatcacctggtagccccactaggcttgaaatgagtaaaaaa
aaagctttagaagaagatgatgaagatgatccattagatgcctttatggcaggaatagaa
gcccaagttaagcaagaaagccaacaaagttgttcttcaagtcagcaacatccaaaagct
gtaagaaatgatttagaagaagaggataatgaagaatcatattatcgttatatggaagag
aatccaaatgctggagtcttaccagttgaagaagatggtatagaaatagaatatgacgaa
gatggaaacccaataccacctgacaagaaaaaaataattgacccacttcctccaattgat
catgctttaatagaatataaaccatttcaaaaaaatttttatattgaacatcctgaaata
aaactacttagtagtacaaaggcatcagaattacgtaagaaatatgatttgcatgtctca
ggaacagacataccaaagccagtagcttcttttggtcactttggattcgatgacaaactt
ctaaaagcaataacaaaagctgaatacagctctcctactcctatacaggcacaaggtgtt
ccttgtgctatgatgggtagagatgtcttaggagttgctcaaactggcagtggaaagact
gcagctttcttatggccacttttgaaacatgtctcggtacaaaaaccggtagaggaagga
gaaggccctattgctcttattttagctccaacaagagaattggcgatacagatttataat
gaggcaaaaaaatttgctagagtgtatgatctacgagtcatatgtgcttatggtggagga
tctaaatgggagcagagcttggcattaaaagagggagcggaaatagttgtcgcaactcct
ggtcgaataattgatcatgttaaaggtggtgccaccaatcttcaacgagttacattcctt
gtactcgatgaagccgataggatgtttgagcttggttttgagcctcaggtgcgatcggtg
tgcaatcatgtgagacccgataggcaaacactacttttttcagcaacatttaggaaaaaa
attgaaagattagcaaaagacgcattgaaggaccctattaaaatttctcaaggaatcact
ggacaagctaatgaggatgttactcagcaaacattgctcttgcccagtcaggaagcaaaa
agagaatggttatttggcaaactagttgaacttatgtcagctggttcagttttaattttt
gtcacaaagaaattggatgctgaaaaggtagctaaagatttgttggtaaaagaatatgat
tgcttattgcttcatggcgacatggagcaggcagaaagaaataaagttatcacagccttt
aagaaacaagaagtcccattattggtcgcgacagatgtagcagcacgtggtttagacatc
cctcatatacgaacagtgattaactatgatatcgcaagagatattgacacgcacactcat
cgaattggtagaactggacgcgcaggaatgcaagggactgcatatacactgctaacattt
aaagataaggaattcgtcggtcatattgttaaaaacctggaagcggctaatcaggaagtc
ccacaggatgtgcttgatttagcattacaaagctcttggtttcgaaagcaacgatttaag
aagaaagaccaatcaccaaatgttggaggtattgggttgggttttaaggaaacttcatcc
agcatgaaaggttttgtagttagctcctccagttcatcgcctgctacatcaaaaggacct
gctactgatagattaacggcaatgaaagatgcatttaaagctcaatatatgagccaattt
cgggctagtacagaaaatcctgttcccccacctcctcaaccaagaagaaaaaaaagccga
tgggaatag
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