Rhynchophorus ferrugineus (red palm weevil): 143201165
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Entry
143201165 CDS
T11283
Symbol
sima
Name
(RefSeq) HIF-1 transcription factor component sima isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg04137
Mitophagy - animal
rfg04140
Autophagy - animal
rfg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
143201165 (sima)
04137 Mitophagy - animal
143201165 (sima)
04148 Efferocytosis
143201165 (sima)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rfg03000
]
143201165 (sima)
Transcription factors [BR:
rfg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
143201165 (sima)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS
PAS_11
PAS_9
HIF-1a_CTAD
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
143201165
NCBI-ProteinID:
XP_076268176
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MCALEFEDGYLASQYLLGNFLGAGSTPAPANEPGPNPVPSAQTTPVVPSVEPAGWQVSDE
AVAEGQSKHAARIHPDGLLAKLALPCQQNNDDFDYGQCYSYYANGCYNVCQFIESGDIED
FMNNEKRKEKSRDAARSRRSRETEIFNDLGNALPLTAEQISHLDKASVMRLAISYLRVRN
MIQIFDVLPVKDNLPENVSVEPVFLKSLEGFVLVLSAEGDFVYLSENVNEYLGITQVDLM
GQNVFDYSHPCDHEEIRDILSAKASDDSETPKSFFIRLKCTLTSKGRSVNLKSATYKVIH
CTGHIIKNEENKDTKKGQLTSCLVAVGQPIPHPSNIDTPLPRQTFLTKHGLDMKFTDADD
EFMMDVLGYTTEDLIGKSVYDYHHAMDSDSIGSAFKCLFSKGQCETNRYRFLAKTGGYVW
VVTQATLIYDKMHKPQSVVCVNYVISGVERKDEIYASHQLASVKSEAASPEPKAIADVRE
ELVDNSEKVVIENVKPATPTRSRPISVTAKLFSTYEPPPKEPEVAVRPHTATKTIFAPRT
KDMSKGFLTFSEEEPGLTMLKDEPDDLTHLAPVAGDVCVPLDDHPFLSDMLDDFLLKDNS
FCPLLNDEPSDPFISYRDFRDSSPQLLSPNLSKGSDSLPSLSSPNNSLMDEDQMSTFMNL
QMDDDPDLAMKAPFIPMNFSDDLPLLISNDLLWNNNEQILNQNRIPENNSTLAQMLSSSV
NKHTLKSSDRGGGTLEDNNIDIYNEKNTNRSWSTKISPKMEIDSIGQIDRSSSLKRSNTS
SYDHQNKRSKNEPKEKMSSELLQQLMSNNHHRGRPKSKENWLLNSGSKAACISQPSDSVL
MNLLGNEDGVKTARLTPEYKLLALQQLQYKKFKLDETRKKLIRKNSLSLLEPNASGIPSL
LDLTQQDYEVNAPVNSSLLQGEELLIALDITKNI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgctttagagtttgaggatggatatctcgccagtcagtacctgcttggaaacttc
ttgggcgccggaagtaccccggcgccagccaacgaacccggacctaatccagtcccttct
gcccagactactccggttgtgccgtcagttgagccagccggctggcaagtttctgatgaa
gctgttgctgagggccagtcaaaacatgctgcaaggatacatcctgacggtctgttggcg
aaactagcgctgccttgtcagcaaaacaatgacgatttcgactacggacaatgttacagt
tattacgcgaacggatgttacaacgtttgtcagtttatcgaatccggagacattgaggat
tttatgaacaatgaaaagcgcaaagaaaagtcgagggatgcggcacgatccagacgatct
agagaaaccgaaatattcaacgatctcggaaatgccctgccgcttacagctgaacagatt
tctcatttggacaaagcttctgtgatgcgactggccatttcgtaccttagagttaggaat
atgattcaaatatttgacgtgctgcccgttaaggacaacctaccggagaacgtttcagtg
gaacccgttttcttgaaatccctagaaggattcgtattggttctatcggcagaaggtgat
ttcgtgtatctgtccgaaaacgtcaacgaatatcttgggataacacaggtggatctgatg
ggacaaaacgtgttcgactatagccatccatgcgatcacgaggaaatcagagatatccta
tcggcaaaggcgtctgacgacagcgagacgcctaagtcgttcttcatacgtctaaaatgc
accctcaccagcaagggacgttcggtaaacctgaaatccgccacctacaaggtgatccac
tgcactggtcatatcattaaaaacgaggagaataaagacaccaagaagggccagttaacc
agctgtctagtcgcggtggggcaacccattcctcacccttctaatatcgacacaccattg
cctcgacaaaccttcttaaccaaacacgggctggatatgaaattcaccgatgccgatgac
gaatttatgatggatgtattgggatatacaactgaagatctcattggcaaatctgtttat
gattaccatcacgccatggacagcgactccatcgggtcagccttcaagtgcctgttttcc
aagggtcagtgcgagaccaaccgctacagattccttgcaaaaacaggcggatacgtttgg
gtcgtcacccaggccaccctaatctacgacaaaatgcataagccgcaaagcgttgtctgc
gtgaattacgtgataagtggtgtcgaacgtaaagatgagatctacgcctcgcatcagttg
gcgtcagtaaaatccgaggcggcttcgcccgaaccgaaagcgatcgcggacgtacgggaa
gaattagtggataatagcgagaaagtggtgattgagaacgtcaaaccggcgacgccgacc
agatctagacccatctccgtgacggcgaaactgttctcgacctacgaaccgccgcccaag
gaacccgaagtcgcggtcaggcctcacaccgccaccaagacgatcttcgcccccagaacc
aaggatatgagcaaaggatttctcacgttttcggaagaagaacccgggttaacaatgttg
aaagatgaacccgacgatttgacacacctggcaccagtagcgggcgatgtgtgcgtacct
ttggacgatcatcctttcctgtcggacatgttggatgacttcctgctgaaagacaatagt
ttctgcccgctactcaacgacgaaccttcggatcccttcatatcctacagggacttcagg
gattcgtcgccacagttgctgtctccgaacttatcgaagggatcagacagtctaccttcc
ctaagtagtccgaacaactccctaatggacgaagaccaaatgtcgacatttatgaacctc
cagatggacgacgaccctgatttagctatgaaggcgccgttcattcccatgaatttctcg
gatgatttacctctgttaatttccaacgacctgctctggaataacaacgaacagatcctt
aaccaaaacaggataccggaaaacaattcgacgttagcgcaaatgcttagttcgtctgtc
aacaaacacaccctcaaaagtagcgacagaggtggaggaacgctcgaagacaacaacata
gatatttataacgaaaaaaatacaaacagaagctggagtacaaaaataagcccaaaaatg
gaaatagactcgataggtcagatagatcgttcatcgagcttgaagcgatcgaacacgtca
tcgtacgatcaccagaacaaaaggagcaaaaacgaaccgaaggagaaaatgtcctcggaa
ctgctgcagcagttaatgtcgaataaccaccatcgaggcagacctaagagtaaagagaat
tggttactaaattccggttcgaaagccgcttgtatatcccagcctagcgacagtgtttta
atgaatctactgggaaacgaagatggtgttaagacggcccgtttaacacccgaatacaaa
ttgctcgccctccagcaacttcaatataaaaaattcaagctggacgaaaccaggaaaaaa
ctgattaggaagaattcgctgtccctcttggaacccaacgcttccggaataccgtcattg
ttggacttgacacagcaagattacgaggtgaacgccccagtaaacagttctctcctgcaa
ggcgaagaactactcatcgctctggatatcacgaagaacatatag
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