Rhynchophorus ferrugineus (red palm weevil): 143201360
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Entry
143201360 CDS
T11283
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2 Rat1 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg03008
Ribosome biogenesis in eukaryotes
rfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
143201360 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
143201360 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfg03021
]
143201360 (Rat1)
03019 Messenger RNA biogenesis [BR:
rfg03019
]
143201360 (Rat1)
03009 Ribosome biogenesis [BR:
rfg03009
]
143201360 (Rat1)
03016 Transfer RNA biogenesis [BR:
rfg03016
]
143201360 (Rat1)
Transcription machinery [BR:
rfg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143201360 (Rat1)
Messenger RNA biogenesis [BR:
rfg03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
143201360 (Rat1)
Ribosome biogenesis [BR:
rfg03009
]
Eukaryotic type
Pre-60S particles
RNases
143201360 (Rat1)
Transfer RNA biogenesis [BR:
rfg03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
143201360 (Rat1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
SLU7_N
DUF8363
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
143201360
NCBI-ProteinID:
XP_076268477
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVHCVEEKSVDVSGTRIPIDSSKPNPNGVEFDNLYLDMNGIIH
PCTHPEDRPAPKNEDEMMVAIFECIDRLFNIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKEAAEKINEIKRIRAELLIKGCVLPPEKPKEEHFDSNCITPGTPFMAHLSECLHYYIH
DRLNNDPGWRGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFRPNKPKPCEICGQLGHDMKDCIGGVRSEHGQEPEVPLSGETDFI
FVRLNVLREYLERELAMPNLPFEYDFDRVLDDWVFMCFFVGNDFLPHLPSLEIRENAIDR
LVRLYKDCIYKTHDYLTNSGDVNLESVQMIMLELGKVEDEIFKNRQQKELQFKAREKAKR
RRNDGYNEYKPNFELLRNTQFAPQAIGNESSLRNARQEAFQIRKAGMHTNAKLQTLNSKT
ALEAMFKKEGEESSSSDGRASLKRKHDEVESDEEESHDEVRLWEDGFKDRYYESKFDVGP
EHLEFRYSVALHYVRGLCWVLKYYYQGCASWKWYYPYHYAPFASDFCNIAGLSTEFESDT
KPFQPLEQLMGVFPAASSKHVPKPWATLMSDPESTIIDFYPEDFKIDLNGKKFAWQGVAL
LPFVEESRLFKALEPYYSELSDAERKRNVRGDDRLYISSKNESYEFLCQLYKNKIDKDDE
VAILNQGMKGSILLSDECVDNGSSLPSPVKGLSPVLDNNVVCVRFRDPKYRKGYIFPAKK
LKGAKDPPRVLKPEDLDAEANRNWRSQIGMAPATQRAYVNQAGHRMLSHYAPRDNKGQYS
SIPPPSNLDHRNKNYGGGFHNQYSSNRGYNQAQNSYGNYGQNNYNSNYNQDHHQQPYKQR
QNRFDGNRRPGPSHNRYDPRNSNRYSYRK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcatttttcaggtggttgagccgaaaatacccttcggtaatagtgcat
tgtgtggaggaaaagagtgtagatgtaagtgggaccagaattcctatagattcttcaaaa
cctaatccaaatggagtagaatttgataatttgtatttggatatgaatggtattatccat
ccttgtacacatccagaagatcgtccagctcccaagaatgaagatgaaatgatggttgct
atttttgagtgcattgatcgtctatttaatattgttagacccaggaagcttctttatatg
gctattgatggggtggcaccacgagctaaaatgaatcaacaaagatctaggagatttcgt
gcatcaaaagaagcagcagaaaagattaatgaaattaaaagaattagagctgagcttctg
ataaaaggttgtgtactacctcctgaaaaaccaaaagaggaacattttgactccaattgt
attactccaggaacaccttttatggctcatttatctgaatgtcttcattattacattcat
gacagattaaataatgaccctggttggagaggtattaaagtaatcttgtctgatgctaat
gttcctggtgaaggtgaacataaaattatggattatattagaaaacaaagagctcaacct
gatcatgatccaaatactcagcatgttctttgtggtgccgatgctgacttaattatgtta
ggtttagccacacatgaacctaatttcacaataattagagaagaatttaggccaaataag
ccgaaaccatgtgaaatatgtggccaattgggtcatgacatgaaagattgcataggaggt
gtgcgtagtgaacatggtcaggaacctgaggtacctcttagtggagaaacagattttatt
tttgttagactgaatgtgttgagggaatatctggaaagggaattagcaatgccaaatctg
ccttttgagtatgactttgacagagtgttagatgattgggttttcatgtgtttctttgtt
ggaaatgactttttgcctcatttacccagtttggaaattagggagaatgctattgatcgc
ctagtgagattatataaagattgtatatacaaaacacacgattatttaacaaatagtgga
gatgttaatttagaaagcgttcagatgataatgttagaattaggtaaagttgaagatgaa
attttcaaaaaccgccaacaaaaagaattacagtttaaagcaagagaaaaagcaaagagg
agaaggaatgatggttacaatgagtacaaacctaattttgagctgcttagaaatacccaa
tttgcaccacaagctattgggaatgaatcaagtctcaggaatgcaagacaagaagcattc
caaataagaaaggcaggtatgcatactaatgctaaactgcaaacattaaactcaaaaaca
gcgctggaggcaatgtttaaaaaggaaggcgaggaaagttccagttcggatggaagggcc
tccttgaaaaggaagcatgatgaagttgagagtgatgaggaggaatctcatgatgaagtt
agattatgggaagatggatttaaagacagatattatgaatctaaatttgatgtgggacct
gaacatctagaatttaggtattctgtagccctccattatgttagaggtttatgctgggtg
ttgaaatactattatcagggttgtgcttcttggaagtggtattatccataccattatgca
ccatttgcctctgatttctgtaacattgctggtttaagtacagaatttgaaagcgatacc
aaaccgttccaaccgttagaacaacttatgggtgtatttccagcagctagtagcaaacat
gttcctaaaccttgggcaacacttatgtcagatcccgaatcaacaattattgatttctac
cctgaagattttaaaattgacttaaacggcaaaaagtttgcgtggcaaggagtcgctctt
ttgccattcgtggaggaaagcagattgtttaaagctctggagccgtattattcggaatta
tcagatgcagagagaaaacgaaatgtaagaggtgatgataggctttacatttcctctaaa
aatgagtcttatgaattcttgtgtcagttatataaaaataagattgacaaagatgatgag
gtagccattttaaatcaaggcatgaaaggttcaatattgctttcagatgaatgtgttgat
aatggcagtagtttaccatctccggttaaaggattgagtcccgtcttagataataatgtc
gtatgcgtgagattccgggatccaaagtaccgtaaaggctacattttccccgcgaagaaa
ttgaaaggtgccaaggatccacccagagtccttaagcccgaggatcttgacgcagaagct
aatagaaattggagatctcaaattggaatggcaccagccacacagagggcctacgtaaat
caagcaggtcataggatgttaagtcattatgctcctagggataataaaggccagtattcc
agcatacctccaccaagtaacttggaccataggaataaaaattatggcggaggattccac
aatcagtattccagtaatcgaggttacaatcaagcccaaaacagctatggaaattatggg
caaaacaattataacagcaactacaatcaggatcatcatcagcagccgtacaagcagagg
cagaatcgattcgacggaaacagaaggccaggcccgtcacacaacagatacgaccctaga
aactcaaacagatatagttatagaaaataa
DBGET
integrated database retrieval system
