Rhynchophorus ferrugineus (red palm weevil): 143202219
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Entry
143202219 CDS
T11283
Symbol
Col4a1
Name
(RefSeq) collagen type IV alpha 1
KO
K06237
collagen type IV alpha
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg04382
Cornified envelope formation
rfg04512
ECM-receptor interaction
rfg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
143202219 (Col4a1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
143202219 (Col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
143202219 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rfg04147
]
143202219 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
rfg00536
]
143202219 (Col4a1)
Exosome [BR:
rfg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
143202219 (Col4a1)
Glycosaminoglycan binding proteins [BR:
rfg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
143202219 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
143202219
NCBI-ProteinID:
XP_076269663
LinkDB
All DBs
Position
Unknown
AA seq
2052 aa
AA seq
DB search
MTDHGLLWFMVLCIGVSSISGQYLNNHRAANRSGLYGRPNERRYGNRQRVSGGAYRSGDY
RPYYESSENQEEDTELPYDNSGYNNERQTVKPTDVYAIKGSYSASSSYDVSLNGGHDKSQ
ASSSGQYGASYGESGNRGDNPDYESIRNYGSSSRGGYGSPGGSYGGSYSSSNNRDSEGRP
LTSGSSSGGGYGSYGSGGAYESSSSSSNTGQVYGSNAGGYDARASGGARGTYESSSSSSN
TGQVYGSNVGGYDARGTYESSSSSSNTGQVYGSSVGGYGSRASGGSRESTRNVNTGGYLS
GSGSSQSSWYSSGAYPSSPYETRRDYSSSYDIMDAPGSVLGPRNGSERCIPKCFAQKGSR
GFPGIPGIPGEKGIRGFPGEEGLQGEKGDRGETGPAGLRGLKGNQGRVGAPGFPGLNGPP
GLPGDEGEPGLPGLDGCNGTDGSPGRPGAAGEQGPRGFPGPTGTKGEKGEAAHCEINLKG
QKGEPGRDGVRGEQGNPGPQGPTGPVGVQGYPGATGPRGPPGLKGQKGVMGISFTGAKGE
KGEKGPQGEKGVPGIDGFILNGTVQIGPKGESGMKGDMGERGSDGLKGDTGPDGDFGIPG
AQGMKGEKGLPGAPGPRGRDGYPGPPGPVGLKGDRGLEGLPGLDGRPGLKGEPGRDGPKG
LQGLVGPPGPPGGGKGTPGPPGPAGPRGYPGPTGPKGLDGFPGEPGSRGPVGPVGGPGLP
GTPGPEGPPGDKGEKGEPGNIGPKGGEGPRGYPGAPGPQGLRGIPGEKGLSIIGPKGDDG
LPGRDGLKGAKGEKGYQGARGAPGDSINGIPGDIGFPGAPGEKGSPGRAGIPGSPGIPGE
KGEKGGTCLNCRPGEKGDKGERGYDGNDGDIGPRGPPGPQGVPGLPGKDGAPGLTGLPGK
PGEDGLDGPPGPEGPPGRPAFIPADLVKGEKGDKGNRGEIGFMGPKGEPGFMGIKGEMGP
PGFPGQKGQAGYPGRPGSDGLPGRDGAKGDKGQKGESVKGATGIKGLPGAPGDTGDPGPP
GPSGSPGRCPENIIAKLKGQMGPVGPKGEPGDRGKDGYPGQKGEPGFQGPPGPRGYQGQD
GPIGHRGLPGPRGEKGNVGPMGFPGDNGRDGDKGFPGLPGLRGDKGEAGIPQVGPPGIPG
PSGPKGEKGLPGFPGKTGPRGNDGLPGLIGEKGDIGEPGLNGLPGPPGQKGEPGPIGPSG
IAGLPGQQGPQGPKGSPGPIGTPGKPGLPGFPGLRGDKGDMGLPGPIGPKGALGRPGNPG
VPGMDGFPGLRGEKGDKGYPGPPGPQGIVGMPGERGFSGEKGDRGPSGPIGSPGLPGRAG
LPGQDGTPGLPGRKGEPGTVGEKGQKGETGFPGIDGTPGILGPRGPKGNIGLPGDSIPGI
IGPKGDRGDRGFDGAPGIPGEKGEPGLPGFMGLKGDRGFPGERGFPGMDGKDGLPGQKGD
TGYPGIPGLKGAKGEIGFPGRDGLDGAPGEKGIQGPIGPVGVPGEKGNIGERGLPGPFIP
VKGEKGEPGPPGVFGRAGEKGDRGLPGPVGAPGEKGDRGLIGIKGDRGWPGQEGQKGNTG
FPGAPGLPGITVKGEKGLPGLPGKHGREGAIGLQGQKGEPGLIGLPGRQGLPGLPGPLGP
QGPKGDRGFEGQVGFPGPQGRPGSTGPSGLPGEKGERGPPGLIGAPGEKGDQGLTGLQGF
IGAPGEKGDRGLDGIPGTPGEIGPRGFKGSIGIQGEFGAIGVVGAKGDKGEPGRPGLNGL
KGERGPIGLKGVIGRPGAPGLDGLVGAIGLTGDKGDRGYPGAPGLQGLQGEKGEAGLNGR
IGLDGVIGDRGPKGEPGEPCQQVSDYLTGTLVVKHSQSREIPQCERGHTKLWEGYSLLYV
SGNERAHSQDLGMAGSCIRKFSTMPVVFCDIDNVCNYASRNDKSYWLSTSAPIPMMPVEE
RQIEEYISRCVVCETPASVIAVHSQSLSLPECPYGWSSLWIGYSFLMHTGAGGNGGGQSL
SSPGSCLEDFRASPFIECNGAQGHCHYFSNMLSFWMATIESSQQFHKPQKQTLKAGNVRD
RVSRCQVCIKNT
NT seq
6159 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcatggacttttatggttcatggtactgtgtataggagtatcgagtatatcc
ggacaatatttaaataatcatcgggctgcaaataggtcgggtctatacggaagacccaat
gagagacgctatggcaaccgtcaacgagtgtccggaggtgcatataggagcggagattac
agaccgtactacgagtccagtgaaaaccaggaagaagacacggaattgccttatgataat
tccggatacaacaacgaaaggcaaacagttaaaccaacggacgtctatgccataaaggga
tcatattcagcttcttcatcgtatgatgtctccttgaatggcggacatgataaatctcaa
gcttcaagcagtggacaatatggagcttcctatggagaatctggtaacagaggtgataat
cccgattatgaaagtattagaaattacggttcatcgagtagaggaggctatggatctcct
ggcggtagttatggtggatcctactcgtcatccaataacagggacagcgaaggcagacct
cttacatccggtagcagcagcggaggaggttacggaagctatggatccggaggtgcatat
gaatcatcaagcagcagtagtaataccggtcaggtctatggatccaatgctgggggttat
gatgccagagcttccggcggggctagaggtacatatgaatcatcaagcagcagtagtaat
accggtcaggtctatggatccaatgttgggggttatgacgctagaggtacatatgagtca
tcgagtagcagtagtaacaccgggcaggtctatggatctagtgttggaggctatggttcc
agggcttccggtgggtcaagagaatccactagaaatgtgaacactggtggctatctttct
ggtagtggttctagtcagtcatcttggtactccagcggggcttatccaagcagcccatat
gaaacaagaagggattattcgagtagctatgacataatggacgctcctggtagtgtatta
gggccaagaaatggaagcgaacgatgtattccgaagtgcttcgctcaaaaaggctcaagg
ggttttcctggtatccctggcattcccggtgagaagggtattcggggttttcctggagag
gaaggtctacagggagaaaaaggagaccgtggtgaaactggtccagcagggcttcgggga
ctcaagggtaatcaaggtagggtcggtgcacctgggttccctgggcttaatggacctcct
ggactgcccggagatgaaggtgagccaggacttcctggtttggatggatgtaatggaact
gacggaagccctggtcgacctggagctgctggtgaacaaggccctcgaggttttccggga
cctacgggaacaaaaggagagaaaggcgaggctgctcattgcgaaataaatttgaaaggt
caaaagggagaaccgggacgagatggtgttagaggggagcagggtaatcccgggccccaa
ggaccaactggcccagttggtgttcaaggttatcccggtgctacgggtccacgaggaccg
cctggactgaaaggccaaaaaggtgtaatgggtatatcatttacgggggcgaagggtgaa
aagggcgaaaagggacctcaaggtgaaaagggtgttcccggaattgacggattcatatta
aatggaacagttcaaatcggacccaagggtgaatctggaatgaagggggatatgggtgaa
aggggttcagatggtttaaaaggtgacactggaccagacggagactttggcattccaggc
gcacaaggtatgaagggagaaaaaggtttacccggagcacccggtccaagaggacgtgat
gggtatccaggtccaccaggcccggtgggactgaaaggtgaccgcggtttagaaggatta
cctggtttagatggacgaccaggtctgaagggtgaacctggtagggatggtccaaagggt
cttcaaggtttggtaggaccccccggacctccaggtggtggcaaaggtactcccggaccg
ccaggacctgctggtcctagaggatacccaggtcctactggtcctaaaggtttagatggt
ttccctggagaaccaggtagtagaggtcccgtaggtcctgtaggaggaccaggattaccc
ggtactccaggtccagaaggcccgcctggtgataaaggagaaaaaggtgaaccaggaaac
attggaccaaaaggtggcgagggaccaagaggataccctggtgcgccaggcccccaaggt
cttcgcggaatacctggtgaaaaaggactatcaattattggtccaaaaggtgatgatggt
ctaccaggaagagatggtttgaaaggggcgaaaggcgaaaagggctatcagggggctcga
ggtgcccctggtgattccataaatggaattcctggagatattggtttccctggtgcacct
ggagaaaaaggcagtccagggcgtgctggtattccaggaagtccaggtattccaggagaa
aagggtgagaaaggtggcacctgtctaaattgtcgtccaggagagaagggcgataaaggt
gaaaggggatacgatggcaatgatggcgatatcggtcctagaggacctcccgggccacaa
ggagtaccaggtttacccggcaaggacggcgcgccaggtctaactggtttgccaggaaag
cctggagaggacggtctagacgggccgcctggacctgagggccccccaggcagaccagca
tttattcctgctgatttagtaaaaggagagaaaggcgataagggtaatcggggagagata
ggattcatgggaccaaaaggtgaacctggatttatgggtatcaagggcgaaatgggtcct
cctggattcccaggacagaaaggacaagctggctatccgggacgacctggtagcgatgga
ttacctggaagagatggagctaaaggtgacaaaggccaaaaaggtgaaagtgtaaagggt
gctactggtataaaggggctaccaggagcaccaggtgatacaggagaccctggtccccca
ggtccatctggctcaccgggaagatgtcccgaaaacataattgccaaactaaaaggtcaa
atggggccggtaggcccaaagggagaaccaggagatagaggtaaagatggttaccctggg
caaaaaggtgaaccgggctttcaaggtccacctggaccccgtggatatcagggacaagat
ggaccaattggacataggggtttgccaggaccaagaggcgaaaaaggcaacgtaggacct
atgggctttcctggtgataatggtagggatggagacaaaggcttcccgggacttccagga
ttaagaggagataaaggagaggcaggaatacctcaagtaggtcctccaggtattcctgga
cccagtggaccaaaaggagaaaaaggtttaccaggcttcccagggaaaacaggaccgaga
ggtaatgacggcttacctggtttgatcggtgaaaaaggagacattggtgaacctggtctg
aatgggcttccgggtcctccaggtcaaaaaggagaaccaggaccaatagggccatctggt
attgcaggattacctggtcaacaaggaccacaaggaccaaaaggatccccagggcctata
ggaacgccaggaaaaccggggttgccaggtttcccaggtctaagaggcgataaaggagat
atgggattacccggacctataggaccgaagggagccttaggtcgaccaggaaatccaggt
gtaccaggaatggacggttttcctggccttagaggagaaaaaggcgacaagggatatcct
gggccaccaggaccacagggtatagtaggaatgccaggtgaaagaggtttctctggagaa
aaaggtgatcgtggtccaagtggtcctattggatcgcctggcttaccaggaagggctggt
ctgccaggccaagatggcacacctggtctaccaggaagaaaaggagaaccgggaacggtt
ggcgaaaaaggacaaaaaggagagacaggattcccaggaattgatggcactccaggaata
ctaggccctagaggaccgaaaggtaacataggactaccaggagacagcattcctggtatt
ataggaccaaaaggagatcgcggcgacagaggttttgatggcgctcccggaatacctggg
gaaaagggtgaaccaggcctcccaggttttatgggacttaaaggtgatcgaggattccct
ggggaaagaggttttcctggtatggatggcaaagacggtttaccaggtcagaaaggagac
acgggctaccccggcatacctggattgaaaggcgctaagggtgagatcggttttccagga
cgggatggactcgatggagctccaggtgaaaaaggcatacaagggcctattgggccagtt
ggtgtccccggagaaaagggaaatattggagaaaggggtttaccaggtccctttatacca
gttaagggagaaaaaggcgagccaggaccaccgggtgttttcggtcgagctggtgaaaaa
ggtgatagaggtttaccgggccctgttggcgcacccggtgagaaaggagatagaggtttg
attggaatcaaaggtgatcgtggctggccaggtcaagaaggacaaaaaggtaacaccggt
tttccaggagctccaggattaccaggaataacggttaaaggagaaaaaggcctacctggt
ttaccaggaaaacatggccgagagggtgctattggtctacaaggccaaaagggagagccg
gggcttattggtttaccaggccgacaaggtttgcctggtcttccaggaccgttaggtcct
caaggacctaagggagacagaggtttcgagggacaggtcggttttccaggaccccaggga
agaccgggatctactgggccatcaggtcttccaggtgaaaaaggagaacgcggtccaccg
ggattaataggtgctcctggagagaagggcgatcaaggattaactggcttacaaggattt
ataggagcacctggcgaaaaaggtgacaggggattggacggtattcccggaaccccagga
gaaataggaccaagaggtttcaaaggatcaataggtattcaaggagaatttggagcaatc
ggtgtcgtaggagctaagggagataagggagaacctggcaggcctggattaaatggcctt
aaaggagaacgaggaccaatcggtctgaagggtgtaattggtagacccggtgcgcccggt
ttggacggacttgtcggtgccattggtcttaccggcgataaaggagacaggggatatccg
ggagcaccaggattacaaggccttcaaggagagaaaggagaggcgggtcttaatggtcgc
attggcctcgatggtgttatcggtgatcgaggtcccaaaggtgaacccggcgaaccttgc
caacaggtatccgattatttgactggaacattggtagtaaaacatagtcaaagtagggag
ataccccaatgtgaacgaggacacaccaaactgtgggaagggtactcgcttctttatgta
tctggtaatgaaagagcacatagtcaagatcttggtatggccggctcatgtataaggaaa
ttctctacaatgcccgtagtattctgcgacatagacaacgtttgcaattacgctagcaga
aacgacaaatcatactggctgtcaaccagcgcgcctattccaatgatgcctgtcgaagag
agacaaatcgaagaatatatttcgagatgtgtcgtttgcgagacaccagccagtgttatc
gctgtgcacagccagtcgctctcactgcccgaatgtccttatggttggagctcactttgg
ataggttacagcttcctaatgcacaccggagctggaggaaacggaggcggacaatcactg
tctagtcccggatcttgcctggaggacttccgagcttctccattcatcgaatgtaacggt
gctcaaggacattgtcattatttctcgaacatgctcagcttctggatggcaaccattgag
tcctctcaacagttccacaagcctcaaaaacaaactcttaaagccggcaatgtcagggat
cgtgttagcagatgccaagtttgtataaagaacacgtaa
DBGET
integrated database retrieval system
