Rhynchophorus ferrugineus (red palm weevil): 143203488
Help
Entry
143203488 CDS
T11283
Symbol
Xpd
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit Xpd isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg03022
Basal transcription factors
rfg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
143203488 (Xpd)
09124 Replication and repair
03420 Nucleotide excision repair
143203488 (Xpd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfg03021
]
143203488 (Xpd)
03036 Chromosome and associated proteins [BR:
rfg03036
]
143203488 (Xpd)
03400 DNA repair and recombination proteins [BR:
rfg03400
]
143203488 (Xpd)
Enzymes [BR:
rfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
143203488 (Xpd)
Transcription machinery [BR:
rfg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
143203488 (Xpd)
Chromosome and associated proteins [BR:
rfg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
143203488 (Xpd)
DNA repair and recombination proteins [BR:
rfg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
143203488 (Xpd)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
AAA_11
nSTAND3
DUF4135
Exog_C
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
143203488
NCBI-ProteinID:
XP_076271778
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MRLSVDGLLVYFPYDYIYPEQYAYMCELKKALDAKGHGLLEMPSGTGKTTTLLSLIVAYM
IEHPHDVRKLIYCSRTVPEIEKVMEELKKLLEYYEQQDGQYPNLVGLVLSSRKNMCIHPQ
VSTEREGKIVDGKCHSLTASYVRERHNIDDTTPICQYYEGFALDGKESNLPCGVYTLDDI
KQYGRDRNWCPYFLARFAIIHANIVVYSYHYLLDPKIADVVSKELTRESVVVFDEAHNID
NVCIDSMSVKIHKRTIERATSNIGTLEKHVAEMREEDHRKLQEEYQRLVEGLRDASIARD
TDLILSNPILPDEVLQEAVPGNIRNAEHFISFLKRFVEYLKTRLRVQHVVQESPVGFLKD
IQQKVCIERKPLRFCAERLASLLRTLEITDMTDFSPIVLITHLATLVSTYTKGFTIIVEP
FDDKTPTVSNPILHFSCLDSSIAIKPVFERFQSVVITSGTLSPLDMYPKILDFHPVVMSS
FTMTLARPCLLPMIVSKGNDQVAISSKFETREDNAVIRNYGQLLVEVAANVPDGIVCFFT
SYLYLESVVAAWYDQGVIDSLQRYKLLFIETQDSAETSFALMYYIKACESGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLDYLRDQFQIRENDFLTFDAMRHA
AQCVGRALRGKTDYGIMIFADKRFARSDKRSKLPKWIQEHLKDNLCNLSTEEAVQIAKRW
LRQMAQPFTREDQLGISLLTLEQLQSLEDKKLQEQVPEKMEL
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaagcgtcgacggccttttagtttattttccatacgattacatttacccagag
cagtatgcctatatgtgtgaattaaaaaaagcactggacgccaaaggccatggcttactt
gaaatgccttcaggcactgggaaaaccacaacacttttgtccttaatagtcgcttatatg
attgagcatccccacgatgttcggaaattaatatattgctcccgaaccgtacctgaaatt
gaaaaagttatggaagagctgaaaaaattgcttgagtattatgagcaacaagatggacaa
tacccaaacttggtgggtctggtactcagttcacggaaaaacatgtgtattcatccccag
gtgagtacagaacgtgaagggaaaattgtcgatgggaaatgtcatagtctcactgctagt
tatgtgagggagagacataacatagatgatacaactccaatatgtcagtattatgagggt
tttgcattggatggtaaagaaagcaatttgccctgcggagtttataccttggatgatata
aaacagtatggacgagataggaactggtgtccttattttctagcacggtttgcaataata
catgctaatatagttgtgtacagttatcattatttactcgatccaaaaattgccgatgta
gtgtcgaaagaacttactagagaatccgtagtggtatttgacgaggctcataacatcgat
aatgtctgcatcgattcgatgagtgttaaaatacataaaagaacaatagaacgggcaacg
tcgaacataggaactttggaaaaacatgtagcagagatgcgcgaggaggaccatcggaaa
ctgcaagaagagtatcagagactagtggaaggacttagagacgccagtatagccagagac
actgatttgattctgtccaatcccattctcccagatgaggttttgcaggaagccgttcca
ggaaatattcggaacgccgagcattttattagttttctcaaaagattcgtggaatatctc
aaaacaagattgagggtacaacacgtagtgcaagaatctcccgtggggtttttaaaggac
attcaacagaaagtgtgtatcgagaggaaacctctcaggttttgcgccgaacgtttggct
tcgctgctgcgcacgttggaaattacagacatgacggatttcagtcccatagtcctaatc
actcacttggcaactctggtatcgacttacaccaaaggctttaccattatcgtggagcct
ttcgacgacaagaccccaacagtctccaatcccattctacacttcagttgcctagattcg
tccattgctattaaacctgtgtttgaacgatttcaaagcgtcgtcatcacgtccggcacc
ctatcgccgctggacatgtatccgaaaatactggactttcatccagttgttatgtcttcc
ttcacgatgactctggcccgaccgtgtttattgccgatgatagtatcgaaaggaaacgac
caggtggccatttcgtccaagttcgaaaccagggaagacaacgccgtaatacgaaactac
ggacaattactcgtcgaggtagcagccaacgtacccgacggtatagtttgttttttcacg
tcctatttgtatctggaatcggtagtggcggcgtggtacgaccaaggtgtcatcgatagt
ctccaaagatacaagctgttgttcatagaaacgcaagactcggctgaaaccagtttcgct
ctgatgtactacatcaaagcctgtgaatccggacgtggggccgttctgttatcagtagcc
agagggaaagtgtccgaaggagtggactttgaccatcacttgggcagggctgttttgatg
ttcggcatcccctacgtctacacccagtcgagaattctgaaagcccgcctggattatctg
agggatcagtttcagataagagaaaacgattttttgacgttcgatgcgatgagacacgca
gctcaatgcgtcggtagagcactgcgtgggaagacagactatggtatcatgatttttgcc
gacaaacgtttcgcccgatcggataagagatcgaagctgcccaagtggatccaggagcat
ctaaaagacaatctttgcaatctgtccaccgaggaagcggtgcagatagcgaaacgatgg
ctcagacagatggcacaacctttcaccagagaggatcagttgggtatttcgctgctgact
ttggaacagctacaaagcttggaggacaagaaactccaagagcaggtgccagaaaaaatg
gagctatga
DBGET
integrated database retrieval system
