Rhynchophorus ferrugineus (red palm weevil): 143204628
Help
Entry
143204628 CDS
T11283
Name
(RefSeq) uncharacterized protein LOC143204628 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rfg Rhynchophorus ferrugineus (red palm weevil)
Pathway
rfg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rfg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143204628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfg03021
]
143204628
03019 Messenger RNA biogenesis [BR:
rfg03019
]
143204628
Transcription machinery [BR:
rfg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143204628
Messenger RNA biogenesis [BR:
rfg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
143204628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
Pcf11_C
zf_PCFS4
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
143204628
NCBI-ProteinID:
XP_076273421
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MTSTDEIKAEYTSSLADLTFNSKPLINVLTILAEENLPNAKVIVEAIEEHLSKVSTDVKL
PILYLIDCIVKNVGQRYTSLFSHNIVSTFSNVFKVVDEKTRSEMFKLRQTWNEVFPPLKL
YAIDVQINTIDPAWPVTAQPTNSIHLNPKFLKGTHTSVKSKPPSEPITPLIPKPTADLDK
ETLLMQEQLLQKQKELLELQRKTLELEVLQTQVKLQEQMKAGTAPVATNILLKPEVAKQL
IPDAMSKNRPTALGQRLPAINSSLPKVNPVNAALAAAKPIRDPRLLRQQKTVPNHKSNDV
ELPGGCVGVVSFQKTQVSENNKNVSSKQGVRDIHKDPRLSNKPDKKSKTSPKSHPSPNCD
LTKSDHSPIKSDKSSSSSSTSSLDSPTKSKSRSSSSSNSSSSGGGKHRKRDKPESGNQEA
VAPGKRGKMSSVKPDNGVYGKGSDEISSAFKNIKNSTKGRNYIRRNVNDSPVLQQDEDLR
GMGKAKDDAKSSDPLKPMDVDLRQFHPNMKKRSSAEGSEQPSKKSKSFDIFDRLFGNEDT
DLRQLAAGNEQKTQNRPPTPPPPIISSKEVDSAEYKAQAQKNNLDAVRAKLANATNREKV
LSKSFNKKRLQGESVGDLDLRSSTQTPPNNIKSKIMISPEEEESIKSGHMTKEQEKNILN
KIFFQIEKDKLREAKQKDNEEAHNVSLQPISDDEFASEEDDGERSSRAVNANEKEERFAK
VGPASTIEDANLGPSQFYPRDGIVFRPGLPWRSRGRGMVPQMGPQIRPPRPWMHQQPMRK
WRGPWSNQSPDYNQMSIDDESSRSPGQEFGNHEFTVHQEDNKTLSIDGMPRDIRIYNSSA
VIFLNWDDPREISFQSGMRRVIFNNKESYVLSFGDGYKECLVNGYTFRVKLGVPSREIFI
NDVGFECFFGGAPVSVTVNDINLNVQLEGPPPQVKISDNKRTDLVLGKINLIINAKIIVP
VFLDAKVQKFVIDGETSTLKFVDSLKRVLINDVPFNVEFGGLPKPFIVHGKKHFIRFSVL
PKGVKPGSVRILDMDGQGNLSPRGAESGEAAPVSPLLPDVKPEAGAVRSNKTGLESPENR
SNSPSLFNNILQQGLNNFDVLSNVLSTSFTSAPSSGSYQVENGEQGTSSAEVQKDAVPQP
TLSQLPPININDLFQKLVASGFVKTAESQKAQNSNNNLHPAIDAINNRNQSVIEATKKSI
EKANNLAKPYKKALGDILKPLSFGKPETLKIRQAPLYSVLYSGMQCSSCGMRFPPEASML
YSQHLDWHFRQNRRGKKNARVASSRRWYYSLADWKNYEEIEDLEEREKNYFDQQQQAEMS
EDGDEDTEIPTVPADPGRTDETCQVCRDTFEQFFNEEKEEWHLKNAIKVDDKTYHPVCFE
DYNQSILETSQDEGKLEEEPAAQNKIIPGLEIILDDDDDEDEDDRPVMANEVVSLPESDE
SKNQEDDKNKDVAQDEKLDDDDDDGDDDDVILNEVAPIKIVVDDDDDDDDDRPFNGPTEP
TGLKKENHFDDGFVDVGEGFVSLNSVGQIKIKSEPVDEDEIPSIPQDTDMVDVSEQLDEH
KTSMADPEPTVAAEPEQSAPSHLQMITSIDGNVELVSNTPMGTASSMSGVGKIKINISKS
LPVIPPKESSETSVSSEPDRNADDSEETVLEEPETLHCKPDLKDTQLKKLPKVAKGSELT
GLCSIM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtacagacgagataaaagccgaatatacctccagtttggcagacttgacattc
aatagcaagcctttaattaatgtattgaccatacttgctgaagaaaatctgccaaatgct
aaagttattgttgaagcaattgaagagcatctttctaaggtctcaacagatgtaaaactg
ccaattctttacctcatagactgcatagtgaaaaatgttggtcaaagatacacaagcttg
tttagccataacattgtttcaacattttccaatgtatttaaagtggtggatgaaaaaaca
agatccgagatgttcaagcttcgacaaacgtggaacgaggtgtttcctccgttaaaactt
tatgcaattgacgtacaaattaacacgatcgatcctgcatggcctgtaactgcccaaccc
acaaacagtattcatctgaatcccaaatttcttaaaggaacgcacacttcagttaaatcc
aagccaccaagtgaaccgataacaccattaattccgaagcccacggccgacttagataaa
gaaacgctactgatgcaggagcagttgttacagaaacagaaagaattgttggagctccag
agaaaaactctggaactggaagtgttacagacgcaggtcaagcttcaggaacagatgaaa
gctggaaccgcgcctgtggcaactaacatccttttgaaaccggaggtggcgaagcaattg
attcctgacgccatgtccaaaaatagaccaacagctctaggtcaaagattgccggctatt
aacagcagtctgcccaaagttaatcccgtgaatgctgccttggcagccgcgaagcccatc
agggatccgaggctgctgcgacagcagaagacggttccgaatcacaaatcgaacgacgtg
gagctcccaggaggttgcgtcggtgtagtgtcttttcaaaaaactcaagtttctgaaaat
aataaaaatgtatcgagtaaacaaggtgtccgagatattcataaagatcctcgtttatca
aataaacccgacaaaaaatccaaaacatcccccaaatcccacccatcccccaactgcgac
ttaactaagtccgatcactcgcccattaagagcgacaagtctagttcgagcagtagcact
agcagtttagactcgcccaccaaaagtaagtctaggtcgtcgagcagtagcaacagcagt
agtagcggcggcggcaagcatcgaaaacgagacaaaccggaaagcggaaaccaagaggcg
gttgcgcccggcaaacgcggtaaaatgtcgtcggtcaagccggacaacggtgtctacggt
aaaggttcggacgagatctcgtcggcgtttaaaaatatcaaaaactcgaccaagggtcgc
aactacatcaggaggaatgtgaacgacagtcccgtcctacaacaggacgaggatcttcgc
ggaatgggcaaggccaaagacgacgccaaatcatcagaccctctcaaaccaatggacgta
gatctgagacaattccaccccaacatgaagaagaggtcgtcagcagagggttccgagcaa
ccctcgaagaaaagcaaaagttttgacatttttgataggcttttcggcaacgaggacacc
gatttgagacagttggctgcgggcaacgagcagaagacccaaaacaggcctcctactcca
ccgcccccgatcatatcatctaaggaagtcgactcggccgagtacaaggcccaagcgcag
aagaataacctggacgctgtcagggctaaactggccaacgcgacgaatcgcgagaaggtc
ctctccaagtcatttaacaagaagaggcttcagggcgagtccgtcggtgacttagacctg
agatccagcacgcagaccccgccaaacaacataaaaagcaaaataatgatctcgccagag
gaggaggagagcatcaagtccggccacatgaccaaggagcaggagaagaacatcctgaac
aagatcttcttccaaatcgagaaggacaagttgcgggaggcgaagcagaaagacaacgag
gaggcgcacaacgtttccttgcagccgatcagcgatgatgagttcgcctccgaggaggac
gacggcgagcggtcgtcgcgagcggtgaacgccaacgagaaggaagaacggttcgccaag
gtgggcccggcgtcgacgatcgaggacgcgaacctcggtccgagccagttctacccgcga
gacggcattgtgttcaggcccggcctgccctggaggagcaggggcaggggaatggtgcct
cagatgggccctcaaattcgtccaccgcgaccgtggatgcaccagcagccgatgcgcaag
tggcggggaccgtggagcaaccagtcgccggattacaaccagatgtccatcgacgacgag
tcgtcccgcagtcccggtcaagagttcggcaatcacgagttcacggtccaccaggaagac
aacaaaacgctgagcatagacggcatgcccagggacattcgcatttacaactccagtgct
gttattttcctaaactgggacgatccccgcgagatatccttccagagcggcatgcgtcgc
gtcatcttcaacaacaaggagtcgtacgtgctgtcgttcggtgacggttacaaagagtgt
ctcgtcaacggttacacgttccgcgtgaaactgggcgtgcctagccgtgagatcttcatc
aacgacgtgggtttcgagtgtttcttcggcggcgcaccggtcagcgtaaccgtgaacgat
atcaatctgaacgtacagctcgaaggaccccctccccaagtgaagatcagcgacaataag
cggactgatctcgtgctcggcaagatcaaccttattattaatgctaagataattgtccct
gttttccttgatgctaaagtacaaaagtttgttatcgatggcgaaacaagtacactaaaa
tttgtagattcactgaaaagagttttaataaatgatgtaccttttaacgttgaatttggt
ggtcttcctaaaccttttattgttcatggtaaaaaacactttatcaggttttcagtcttg
cctaagggcgttaaaccgggctccgttagaatccttgacatggacgggcaaggtaatcta
agtccgcggggggcggaatcgggcgaggctgcgcccgtgagtcccctcttgccggatgtc
aagccagaggccggcgcggttagatctaacaagaccggactggagtcgccggagaacagg
agcaactccccgagcctcttcaataatatcttacagcaaggcttaaataatttcgacgtt
ctatctaacgtgttgtcgacctctttcacgtccgcccccagttccggcagttaccaggta
gaaaacggggaacaaggcacctcctccgccgaggtgcagaaggacgccgtccctcagccg
actctctctcagctacctcccatcaatatcaacgacctgttccagaaactggtcgcttcc
ggattcgtgaagaccgccgagagtcagaaggcgcagaacagcaacaataacctgcatcct
gcgatcgatgcgatcaacaacagaaaccagtcggttatcgaggcgactaaaaagtccatc
gagaaggctaataatttggcgaaaccctataaaaaagcgctcggcgacatcctgaaaccg
ctcagtttcggcaagccggaaaccttgaaaatcagacaggcgccgttgtattctgtattg
tattcgggcatgcagtgttccagttgcggtatgaggttcccgcctgaggccagcatgtta
tatagtcaacacttagactggcacttcaggcagaaccgaaggggcaagaaaaacgctagg
gtagccagtagtcgaaggtggtactactcgctagcggactggaaaaattacgaggaaatt
gaggatctggaggaaagagaaaagaactatttcgatcaacaacaacaggctgagatgtca
gaggatggtgacgaggatacggaaataccaacggtaccggccgatcctgggcgaaccgat
gaaacgtgccaagtgtgcagagatactttcgaacaattcttcaacgaagaaaaggaagag
tggcaccttaagaatgccattaaagttgatgataaaacttatcatccggtatgtttcgag
gactacaaccaatctatcttggaaaccagccaagacgagggcaagttagaggaggaacca
gcggcacagaataaaatcataccaggcctggaaatcatcctcgacgatgacgatgacgaa
gatgaagatgatcggccagtgatggcaaacgaagtggtttcgttgccggaaagcgatgaa
tctaagaatcaggaggatgacaaaaataaggacgtagcccaggacgaaaaattggacgat
gatgatgatgacggcgacgatgacgatgtaattttaaatgaggtcgcccccatcaagatc
gtggtggacgacgatgacgatgatgatgacgaccgacccttcaacggacccacggaaccg
acaggtctgaagaaggagaaccatttcgacgatggtttcgtcgacgtcggcgaaggattc
gtcagcttaaacagtgtgggtcagattaagattaaaagcgaacctgttgatgaagatgag
atcccatcaattccacaggacacggatatggttgatgtttccgaacagttggacgagcac
aaaacgtccatggcagatccagaaccgaccgttgcggccgaaccggaacagtcggctccc
tctcaccttcaaatgatcacgtccatagacgggaacgtggaactggtgtcgaatacgccg
atgggaacggcctcgtcgatgtccggtgtcggtaaaataaaaataaacatttcgaaatct
ttgcctgtgatacccccgaaagaatctagtgagactagtgttagtagtgaacccgatcgg
aacgcggacgatagtgaggaaactgtgctcgaggaaccggagacgcttcactgtaagcca
gatctgaaggacacgcaattgaaaaaactacccaaagtcgcgaaaggcagtgaactaacg
ggtttatgttccataatgtaa
DBGET
integrated database retrieval system
