Roseomonas fluvialis: Rmf_01080
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Entry
Rmf_01080 CDS
T08992
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl00300
Lysine biosynthesis
rfl00470
D-Amino acid metabolism
rfl01100
Metabolic pathways
rfl01110
Biosynthesis of secondary metabolites
rfl01120
Microbial metabolism in diverse environments
rfl01230
Biosynthesis of amino acids
Module
rfl_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Rmf_01080 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Rmf_01080 (lysA)
Enzymes [BR:
rfl01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Rmf_01080 (lysA)
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
BDG70179
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All DBs
Position
109760..111100
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AA seq
446 aa
AA seq
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MAAPLPLSDSSDPTFAELLALRPHLSLHAMDGLVMEEVPLARIAAEVGTPAWVYSAGALR
RRARALKDALSGAGLDATIHFAMKCNDNLSVLRVLAAEGLGADVVSEGELRIARAAGIPA
SAIVFSGVGKTVSEITHAIEQDIFQINAESAEEIDMISAIAAGLGRTARVALRVNPDVDA
KTHAKITTGKSENKFGVAISDAVAIYARMAALPGIEPIGIATHIGSQITAGMSAYRAAYA
RLAETIRELRARGLPVQRVDCGGGLGIPYRDEPAPSPEALAGAIKATLGDLGLPVMLEPG
RWIAGPAGVLLASVVLQKQGAAHRFVVVDAAMNDLVRPAMYEAWHGIVPVGAARAASPLS
AAEVVGPVCETGDTFARGRMLPVLAQGDAVAFLDAGAYGAVMSSTYNARPLAPEVLVDGA
RYAVVRERQTHDALLHGQRVPEWLAP
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgccgctccccctgtccgacagttccgacccgaccttcgcagaattgctggcg
ttgcgcccgcatctgtccctgcacgccatggacgggctggtcatggaggaggtgccgctg
gcgcgcatcgcggccgaggtcggcacccccgcctgggtctattccgcgggtgcgctgcgt
cgccgcgcgcgtgcgctgaaggatgcgctgtccggtgcggggctggatgcgaccatccac
ttcgccatgaagtgtaacgacaacctgtcggtgctgcgtgtcctcgccgccgagggcctc
ggcgccgacgtggtcagcgagggcgagctccgcatcgctcgcgccgccggcatcccggcc
agcgccatcgtcttctccggcgtcggcaagaccgtgtccgagatcacccacgccatcgag
caggacatcttccagatcaacgccgagagcgcggaggagatcgacatgatctccgccatc
gccgcaggcctcggccgcacggcgcgcgtggcgctgcgcgtgaacccggacgtggatgcc
aagacccacgccaagatcaccaccggcaaaagcgagaacaagttcggcgttgcgatctcg
gacgcggtggcgatctacgcccgaatggcggcgctgccggggatcgagccgatcggcatc
gcgacccatatcggcagccagatcaccgccggcatgtcggcgtatcgcgccgcctatgcg
cgcctggccgagaccatccgcgaattgcgcgcccgcggcctgccggtgcagcgcgtggat
tgcggcggcggcctcggcattccgtatcgcgacgaacccgctccgagccccgaggcgctg
gccggtgcgatcaaggcgacgctgggggatctcggcctgccggtcatgctggaacccggg
cgctggatcgccgggccggcgggcgttctgctggcatcggtcgtgctgcagaagcagggc
gcggcgcaccggttcgtggtggtggatgcggcgatgaacgacctggtgcgccccgccatg
tacgaggcctggcacggcatcgtcccggtcggtgccgcgcgcgccgcatcgccgctttcg
gcggccgaggtggtcggcccggtctgcgagaccggtgacaccttcgcccgcggccggatg
ctaccggttctcgcgcagggcgacgcggtcgcgttcctggatgcgggcgcctatggcgcg
gtgatgtcgtcgacctacaacgcacggccgctggcaccggaggtgctggtggacggtgcg
cgctacgccgtggtgcgcgaacgccagactcatgacgccctgctgcacggccaacgcgtg
ccggagtggctggcgccatga
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