Roseomonas fluvialis: Rmf_01720
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Entry
Rmf_01720 CDS
T08992
Name
(GenBank) very short patch repair endonuclease
KO
K07458
DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Organism
rfl
Roseomonas fluvialis
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_01720
DNA repair and recombination proteins [BR:
rfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
Rmf_01720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vsr
MTES_1575
DUF559
Motif
Other DBs
NCBI-ProteinID:
BDG70243
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All DBs
Position
complement(176998..177417)
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AA seq
139 aa
AA seq
DB search
MADRISLEARSRNMAAIRGKNTKPELTVRRGLHAIGYRFRLHRRDLPGSPDIVFPSRRIA
IEVRGCFFHRHGCANSALPKSRTDWWLKKLDGNVARDLRNEAALLALGWRLLVIWECDVR
QDAEAVLRRAADILGPVRA
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaggatcagcctggaggcgcgcagccgcaacatggccgcgatccgggggaag
aataccaagccggaactgactgtccggcgcggcctgcacgccatcggctatcggttcagg
ctgcatcgccgggacctgccaggatcaccggatatcgtcttcccctcccggcggatcgcc
attgaggttcgggggtgcttcttccaccgccatggctgcgccaattccgccctgccgaag
tcccggaccgactggtggctgaagaagctagacggaaatgtcgcccgggacctccggaac
gaagcggctctgctggccctcggctggcggctgctggtgatctgggaatgcgacgttcgg
caagatgccgaggctgtgctacgtcgcgcggccgacatcttaggcccggttcgggcttga
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