Roseomonas fluvialis: Rmf_07900
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Entry
Rmf_07900 CDS
T08992
Name
(GenBank) mismatch-specific DNA-glycosylase
KO
K03649
double-stranded uracil-DNA glycosylase [EC:
3.2.2.28
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rmf_07900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_07900
Enzymes [BR:
rfl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.28 double-stranded uracil-DNA glycosylase
Rmf_07900
DNA repair and recombination proteins [BR:
rfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rmf_07900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
BDG70861
LinkDB
All DBs
Position
complement(795292..795804)
Genome browser
AA seq
170 aa
AA seq
DB search
MPAAILPDLLRPGLRLVFCGTAAGAASAARGAYYAGRGNRFWPILAAAGLTPRRLAPEEF
AVLDRWGIGLTDIAKHVSGNDADLPRGALDATDLRRRLRVAKPAMIAFNGKAAAAAALGR
PSRGIAFGPQASAPELPPAWVLPSTSGAAGGSWDAAHWMALGRWFHEGET
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgccggcggcgatcctcccggacctgctgcgacccgggctgcgcctggtgttctgcggc
accgccgcgggggcggcttcggccgcgcgcggggcctactacgccgggcgaggcaaccgc
ttctggccgatcctggccgcggcgggcctgacaccacggcgcctggcacccgaggaattc
gccgtgctcgacaggtggggcatcggcctgaccgatatcgccaagcatgtctcgggcaac
gatgcggacctgccgcgcggcgcgctcgacgcgacggacctcaggcggcgcctgcgcgtg
gcgaagcccgcgatgatcgcgttcaatggaaaggcggcggcggcagcggcgctcggtcga
ccgtcgcgcgggatcgcctttgggccgcaggcgtcagcgccggagctgccgcccgcctgg
gtattgccgtcgacctcgggggctgccggcggctcctgggatgcggcgcactggatggcg
ctcggccgatggttccacgagggagagacatga
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