Roseomonas fluvialis: Rmf_18090
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Entry
Rmf_18090 CDS
T08992
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmf_18090 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfl03019
]
Rmf_18090 (recQ)
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_18090 (recQ)
Enzymes [BR:
rfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmf_18090 (recQ)
Messenger RNA biogenesis [BR:
rfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmf_18090 (recQ)
DNA repair and recombination proteins [BR:
rfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rmf_18090 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BDG71880
LinkDB
All DBs
Position
1841845..1843650
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AA seq
601 aa
AA seq
DB search
MRALEDPSEVLRRVFGHEGFRGRQEEIIRHAADGGSGVVLMPTGGGKSLCFQVPALCRAG
VGVVVSPLIALMEDQVAALRQQGVAAAALHSDLPPDEARGVLRDLHGGRLKLLYVSPERL
TLDGTLQRLDELPIALFAVDEAHCVSQWGHHFRPEYRGLGVLGQRFPGVPRLALTATADP
RTVEDIRRQLDLADAPVFRASFDRPNIFISAAPRESERGQLRGLIARAGGCGIVYCGSRA
RTESTAEWLRGDGHDALAFHAGMDAGAKRDAHRRFARGDNVIMAATIAFGMGIDRPDVRW
VAHLDLPRSPESWYQEIGRGGRDGLPAMALLMYGAGDMALARHRIAESPASEEQKRVERS
RLDAMIAIAEASTCRRTLLLRCFGEEPEKAECGACDVCRTPPRLVDGTVSAQKMLSAVVR
TGQRFGVGHVVDVLRGRLTDKVAQFAHDKLPTFGIGKDVSDSAWRGIARQLVARGVLDVA
VENHGELVATEAARAVLRGQEAVMLREDTAQPSARRAAREEGPQAGSGDPVFEALRAWRR
GVAQAQGVPAYVVADDRTLAGIASRLPATIDDLLEVPGMGRSRVERYGGDILRIVAESAG
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgctggaggatccctccgaggtcctccgccgggtcttcggccacgaaggcttc
cgcggccggcaggaggagatcatccgccacgccgccgacggcgggtcgggcgtggtgctc
atgccgaccggcggcggcaagagcctgtgcttccaggtgccggcgctgtgccgggccggg
gttggcgtggttgtctcgccgctgatcgcgctgatggaggaccaggtcgccgccttgcgc
cagcagggcgtggccgccgccgccctgcattctgacctgccgccggatgaggcgcgcggc
gtgctgcgcgacctgcatggcgggcggctgaagctgctctatgtctctcccgagcggctt
accttggatggcacgctgcagcggctcgacgaattgccgatcgcgctgttcgcggtcgat
gaagcgcattgcgtcagccagtgggggcatcacttccggcccgaataccgcgggttgggc
gtgctggggcagcgcttcccgggcgtgccgcgcctggcgctgaccgccaccgccgacccg
cgcacggtcgaggatatccgccggcagctcgaccttgccgatgcgccggtgttccgggcg
tccttcgaccgaccgaacatcttcatcagcgccgcgccgcgggagagcgagcgtgggcag
ttgcgcgggctgatcgcgcgggcgggcggttgcggcatcgtctattgcggctcgcgtgcg
cggaccgagagcacggccgaatggttgcgcggcgacgggcatgatgcgctcgcgttccat
gccgggatggatgccggtgcgaagcgcgacgcacatcgccgcttcgcccgtggcgacaac
gtgatcatggcggccaccatcgccttcggcatggggatcgaccgaccggatgtgcgctgg
gtcgcgcacctggacctgccgcgcagccccgagagctggtaccaggagatcggccgtggc
ggccgcgatggcctgcctgcgatggcgctgctgatgtacggcgcgggcgacatggccctg
gcgcggcaccgcatcgccgagagccccgcgagcgaggagcagaagcgcgtcgagcggtcg
cgcctcgatgccatgatcgcgatcgccgaggcttcgacctgccgtcgcacgctgctgctg
cgctgcttcggcgaggaacctgagaaagccgagtgcggcgcctgcgatgtgtgccgcacg
ccgccgcgcctggtcgatgggacggtgtcggcgcagaagatgctctccgccgtggtgcgc
accgggcagcgcttcggtgtgggccatgtggtcgatgtcctgcgcgggcgcctgaccgac
aaggtcgcgcagttcgcccatgacaagttgccgaccttcggcatcggcaaggatgtgtcg
gacagcgcgtggcgcggcatcgcgcggcagctcgtggcgcgcggcgtgctggacgtggcg
gtggaaaaccacggcgagctggtcgcgactgaagcggcgcgtgccgtcctgcgcgggcag
gaagcggtgatgctgcgcgaggatacggcgcagccctcggcccgccgcgccgcacgcgag
gaaggcccgcaggcggggtccggagatcccgtgttcgaggcgctgcgcgcctggcgccgc
ggtgtggcgcaggcgcagggcgtgccggcctatgtggtggccgatgatcgcactctggcg
ggcatcgcgtcgcggctgccggccacgatcgacgatctgctcgaggttcctggcatgggg
cgctcgcgggtcgaacgctatggcggggatatcctgcgcatcgtggcggagagtgccggc
gtgtga
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