Roseomonas fluvialis: Rmf_24990
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Entry
Rmf_24990 CDS
T08992
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmf_24990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfl03019
]
Rmf_24990
Messenger RNA biogenesis [BR:
rfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rmf_24990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BDG72570
UniProt:
A0ABM7Y328
LinkDB
All DBs
Position
complement(2573809..2575455)
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AA seq
548 aa
AA seq
DB search
MNALSGDLAFLPLGGTGEIGMNLNVYRCDDQLLAVDCGLGFAGRDNPEVDVMVPDPGWLA
ARRDRLLGLVITHAHEDHIGAVTHLWRQFRCKIFATPFAATVLTRKLTEAGMAQEVPLVV
TQPRARFRLGPFDCEYIPVAHSIPEAQALAIRTRHGTVLHTGDWKLDPDPLVGPRTDEAA
FAKLGEEGVLAIVCDSTNAMVEGHSGSEAEVRRNLAALIRPMTGRVAVTGFASNVARLES
IALAGRAAGRQVALIGRSLRNIEAAARECGYLKSIPPFLPEEEAGYLPDEEILLICTGSQ
GEPRSAMAKIAEDTHPHIALGEGDTVIFSSRRIPGNERAIQRIQDGLVRRGCKVMTDDDH
MVHVSGHPARDELKRLYALVKPRFAVPVHGEWRHMQDHAGLATECGATPFLIEDGDVLRL
SGNRPEVVESVPAGRLAVDADRLVPMDGAILAARRRMMFNGVVVASIAVDGQGRVLGQPQ
IAAPGLFDVGDAEPMLIAADLREAVAALPAALKREDDALREAARGALRKAVGRRLRKRPT
VEVHLLRV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcattgtccggcgacctcgccttcctcccgctcggcgggaccggcgagatcggc
atgaacctgaacgtctaccgctgcgacgaccaattgctggcggtggattgcggcctgggc
ttcgccgggcgcgacaaccccgaagtcgatgtcatggtgcccgacccgggctggctcgcg
gcgcgccgcgaccgcctgctgggcctggtcatcacccacgcgcatgaggaccacatcggt
gcggtcacgcatctgtggcgacaatttcgctgcaagatcttcgcgacacccttcgccgcg
accgtgctgacgcgcaagctgaccgaagccggcatggcgcaggaggtgccgctggtggtc
acgcaaccgcgcgcgcgcttccgcctcggccccttcgactgcgaatacatcccggtcgcg
cattccatccccgaggcccaggcgctcgcgatccgcacgcgccatggaacggtgctgcac
acaggggactggaagctcgaccccgacccgctggttggcccccgcacggatgaggccgcc
ttcgccaagctcggcgaggaaggcgtgctcgccatagtctgcgattcgaccaatgccatg
gtcgaaggccattcgggcagcgaggccgaggtccggcgcaatctggccgcgctgatccgg
cccatgaccgggcgcgtggcggtgactggattcgcctccaatgtcgcgcggcttgaatcc
attgcgctggccgggcgcgccgcggggcgccaggtggcgctgatcggccgcagcctgcgc
aacatcgaggccgccgcgcgcgaatgcggctacctgaagtcgatcccgcccttcctgccc
gaggaggaggccggctacctgccggacgaggaaatcctgctgatctgcaccggcagccag
ggcgaaccgcgctcggccatggccaagatcgccgaggacacccacccgcacatcgcgctt
ggcgagggcgatacggtcatcttctcctcccgccgcatcccggggaacgaacgcgccatc
cagcgcattcaggacgggctggtgcgccgcggctgcaaggtgatgaccgacgacgaccac
atggtccatgtctccggccatccggcgcgcgacgagctgaagcgcctctatgcgctggtg
aagccgcgcttcgccgtgccggtgcatggcgaatggcgtcacatgcaggaccatgccggt
ctcgcgaccgaatgcggcgcgacgcccttcctgatcgaggatggtgacgtgctgcgcctg
tcgggcaaccggcccgaggtggtggaatccgtcccggcgggtcgcctcgccgtcgatgcc
gaccggctggtgccgatggacggcgccatcctggccgcgcgccggcggatgatgttcaac
ggcgtggtggtcgcctcgatcgcggtggacgggcagggcagggtgctgggccagccgcag
atcgcggcccccggcctgttcgacgtgggcgatgccgaacccatgctgatcgccgcggac
ctgcgcgaggcggtggccgccctgccggccgcgctgaagcgggaggacgatgcgctgcgc
gaggccgcccgcggtgcgctgcgcaaggcggtcgggcgccggctgcgcaagcgccctacg
gtcgaggtccacctgctgcgcgtctga
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