Roseomonas fluvialis: Rmf_32890
Help
Entry
Rmf_32890 CDS
T08992
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmf_32890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfl03019
]
Rmf_32890
03009 Ribosome biogenesis [BR:
rfl03009
]
Rmf_32890
Enzymes [BR:
rfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rmf_32890
Messenger RNA biogenesis [BR:
rfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmf_32890
Ribosome biogenesis [BR:
rfl03009
]
Prokaryotic type
rRNA helicases
Rmf_32890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DUF6175
Motif
Other DBs
NCBI-ProteinID:
BDG73360
LinkDB
All DBs
Position
3378891..3380654
Genome browser
AA seq
587 aa
AA seq
DB search
MSFDTLPAPLLAALSARGYAQPTPVQAAVLQPEAAGRDLLVSAQTGSGKTVAYGLALAPE
LIGEAPRLPPAGAPLALVVAPTRELALQVKAELTWLFAPAGGRVVSCVGGMDPVAERRLL
SQGTHIVVGTPGRLRDHLERGNLAPAALRAVVLDEADEMLDLGFKEELEAILEETPAERR
TLMFSATVPRGIAALAKGYQRDALRIEVASEGGQHGDIDYRAAVVAPHEIERAVVNILRL
EDARIAMVFCATRATVTRLQGNLSERGFSTVALSGELSQAERNRALQSLRDGRARVCVAT
DVAARGIDLPDLGLVIHAELPRDPETLLHRSGRTGRAGRKGVSVLLVPHTRRGLAQRLLG
AARVTATWAPAPSAEAIRARDAERLSAQVVALAAEEPAEEDLAVAQALLADPALAEGGAQ
ALAAALVRVLRAPLPAPEELTEFNDRPAVRDRRDATPRTAHDGAREAPPNREPGGQEGIW
FRMDVGRNGNADPRWLLPFLCRRGHVTRQEIGRIRILGRETQFEVAPYAAARFAAAARRA
EGEDAHIKVEPMQPVKGPPRLSRRPEAARAGAGRSDAGPRPAPKRRP
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgataccctgcccgcgccgctgctggctgcgctctccgcccgcggctatgcc
cagcccacccccgtccaggctgccgtgctgcagccggaggccgccgggcgcgacctgctg
gtctcggcccagaccgggtccggcaagaccgtcgcctatggcctggccctggcacccgag
ctgatcggcgaggccccgcgcctgccgccggccggcgccccgctggcgctggtggtcgca
cccacgcgcgaactggccttgcaggtgaaggcggaactgacctggctcttcgccccggcc
ggcgggcgggtcgtctcctgcgtcggcggcatggaccccgtggcggaacgccggctgctc
tcccagggcacgcacatcgtggtcggcacgcccgggcgcctgcgcgaccacctggagcgc
ggcaacctggccccggccgcgctgcgcgccgtggtgctggacgaggcggacgagatgctc
gacctcggcttcaaggaggagttggaggcgatcctcgaggagacgccggccgaacgccgc
acgctgatgttctcggccaccgtgccgcgcggcatcgccgcacttgccaagggctaccag
cgcgacgcgctgcgcatcgaggtggcgtccgaaggtggccagcatggcgacatcgactac
cgcgccgccgtcgtcgcaccgcacgagatcgagcgtgccgtggtgaatatccttcgcctc
gaggatgcgcgcattgccatggtgttctgcgcgacccgcgcgacggtgacgcggctgcag
ggcaacctgtcggaacgcggcttctcgaccgtggcgctgtcgggcgaactctcgcaggcc
gaacgcaatcgcgccctgcagagcctgcgcgacggccgtgcgcgcgtgtgtgtcgcgacc
gacgtcgcggcgcgcggcatcgacctgccggacctcggcctggtgatccatgccgaattg
ccgcgtgacccggagacgctgctgcaccggtcggggcgcaccgggcgggccgggcggaag
ggcgtgtcggtgctgctggtgcctcatacgcggcgcgggctggcgcagcggctgctgggc
gcggcgcgggtgaccgcgacctgggcgccggcgccctcggccgaggcaatccgcgcgcgc
gatgcggagcggttgtcggcccaggtggtcgcgctggccgccgaggaaccggccgaggaa
gacctggccgtcgcgcaggcgctgctggccgaccccgccctggccgagggcggcgcgcag
gcgttggccgccgcgctggtgcgcgtgctgcgcgcacccctgcccgcgcccgaggaactg
accgagttcaacgaccgccccgcggtgcgcgaccgccgtgacgcgacgccgcgcacggcg
catgacggcgcgcgcgaagccccgccgaaccgcgagcccggcggccaggaaggcatctgg
ttccgcatggatgtgggtcgcaacggcaatgccgacccgcgctggttgctgcccttcctg
tgccggcgcggccacgtcacgcgccaggagatcgggcgcatccgcatcctgggccgcgag
acgcagttcgaggtcgccccctatgccgccgcccgcttcgccgccgcggcgcgccgcgcc
gagggcgaggacgcgcacatcaaggtcgaacccatgcagccggtgaagggcccgccgcgc
ctgtcgcgccggcccgaggcggcgcgggcgggcgcgggccgcagcgatgccggcccgcgc
ccggcgccgaaacgtcggccctga
DBGET
integrated database retrieval system
